BLASTN 2.15.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: JFD2MYGU01R Database: UniVec (build 10.1) 6,113 sequences; 1,270,396 total letters Query= gnl|VecScreen|Example Database sequence with vector contamination Length=1057 Score E Max Sequences producing significant alignments: (Bits) Value Ident gnl|uv|X52328.1:605-699 pBluescript II SK(+) vector DNA, phage... 84.6 6e-14 98% gnl|uv|AF025846.2:711-806 Co-reporter vector pRL-TK 80.6 9e-13 98% gnl|uv|DQ092493.1:7097-7193 Cloning vector pCYPAC7 80.6 9e-13 100% gnl|uv|NGB00028.1:2102-2197 New England BioLabs cloning vector... 78.6 4e-12 98% gnl|uv|L08785.1:411-506 BlueScribe KS Plus cloning vector 78.6 4e-12 98% gnl|uv|JX310867.1:571-669 Cloning vector pJAK16-Blue 76.6 2e-11 98% gnl|uv|U13863.1:1189-1278 pPL-Lambda cloning vector 70.6 1e-09 98% gnl|uv|NGB00311.1:1-48 Multimer of EcoRI adaptor used in I.M.A... 70.6 1e-09 98% gnl|uv|L08957.1:2800-2870-48 pTZ19R cloning vector from PL-Pha... 70.6 1e-09 98% gnl|uv|U47120.2:791-908 Cloning vector pCI-neo, mammalian expr... 68.6 4e-09 98% gnl|uv|NGB00359.1:12916-12965 CHORI vector pCYPAC2 68.6 4e-09 98% gnl|uv|AF234314.1:7356-7407 Binary vector pCAMBIA-2201 58.6 4e-06 100% gnl|uv|U02435.1:1-65 Cloning vector pSVbeta 58.6 4e-06 100% gnl|uv|U67875.1:8796-9922 pESP-I yeast expression vector 58.6 4e-06 100% gnl|uv|X65320.2:561-660 Cloning vector pCAT-Promoter 58.6 4e-06 100% gnl|uv|U13859.1:1543-1708 pKK232-8 cloning vector 58.6 4e-06 100% gnl|uv|U13859.1:128-364 pKK232-8 cloning vector 58.6 4e-06 100% gnl|uv|NGB00268.1:1-50 NotI oligo-dT primer used in I.M.A.G.E.... 58.6 4e-06 100% gnl|uv|NGB00406.1:262-328 Cloning Vector pT7Blue 58.6 4e-06 100% gnl|uv|U46017.1:676-780 Cloning vector pPCR-Script Amp SK(+) 58.6 4e-06 100% gnl|uv|X52327.1:412-508 pBluescript II KS(+) vector DNA, phage... 58.6 4e-06 100% gnl|uv|U89672.1:894-975 Cloning vector pIRES1hyg 56.6 2e-05 100% gnl|uv|U14626.1:189-288 Cloning vector pSVSport1 beta-lactamas... 56.6 2e-05 100% gnl|uv|U78872.1:905-991 Cloning vector pGEX-6P-1 56.6 2e-05 100% gnl|uv|EF081457.1:96-146 Cloning vector pTARBAC6 56.6 2e-05 100% gnl|uv|AY712953.1:1300-1416 Mini-Tn7 delivery vector pUC18R6KT... 56.6 2e-05 100% gnl|uv|EF025088.1:168-276 Cloning vector pGT2 56.6 2e-05 100% gnl|uv|NGB00531.1:1-40 454 Life Sciences GS FLX Titanium MID-1... 56.6 2e-05 100% gnl|uv|NGB00954.1:1-43 Ion Xpress Barcode 82 A Adapter 56.6 2e-05 100% gnl|uv|NGB00806.1:1-63 Illumina TruSeq Small RNA Sample Prep K... 56.6 2e-05 100% gnl|uv|NGB00020.1:2556-2635 New England BioLabs cloning vector... 56.6 2e-05 100% gnl|uv|U37573.1:702-859 Phagemid vector pBK-CMV 56.6 2e-05 100% gnl|uv|U02442.1:661-758 Cloning vector pADbeta 54.6 7e-05 100% gnl|uv|NGB00406.1:1-144 Cloning Vector pT7Blue 54.6 7e-05 100% gnl|uv|U25061.1:4526-4622 Cloning vector pBBR1MCS-5 REP, LacZ ... 52.6 3e-04 100% gnl|uv|AF061932.1:1400-1686 Plasposon pTnMod-STp' 52.6 3e-04 100% gnl|uv|AF061932.1:561-660 Plasposon pTnMod-STp' 52.6 3e-04 100% gnl|uv|NGB00968.1:1-43 Ion Xpress Barcode 96 A Adapter 52.6 3e-04 100% gnl|uv|NGB00026.1:1029-1408 New England BioLabs cloning vector... 52.6 3e-04 100% gnl|uv|KC847296.1:1-1293 Cloning vector pSEVA338 48.5 0.004 100% gnl|uv|U55758.1:1125-1223 Baculovirus transfer vector pBacPAK-... 46.5 0.017 97% gnl|uv|U02428.1:856-946 Cloning vector pDR2 44.5 0.068 100% gnl|uv|U02442.1:1-499 Cloning vector pADbeta 44.5 0.068 100% gnl|uv|AF092169.1:1-56 Cloning vector pNTKV1907 44.5 0.068 100% gnl|uv|U02444.1:1-51 Cloning vector pKK388-1 44.5 0.068 100% gnl|uv|U02441.1:1044-1210 Cloning vector pGUS N358->S 44.5 0.068 100% gnl|uv|U02437.1:4662-4674-49 Cloning vector pT3/T7-LUC 44.5 0.068 100% gnl|uv|U02439.1:1-220 Cloning vector pKK233-2 44.5 0.068 100% gnl|uv|AY508733.1:1609-1706 Cloning vector psiLentGene Neomycin 44.5 0.068 100% gnl|uv|AF013258.1:1155-1263 Expression vector pSG5 44.5 0.068 100% gnl|uv|U67875.1:6835-8216 pESP-I yeast expression vector 44.5 0.068 100% gnl|uv|U89931.1:3098-3146-49 Cloning vector pTRE 44.5 0.068 100% gnl|uv|NGB00208.1:1-57 NotI oligo-dT primer used in I.M.A.G.E.... 44.5 0.068 100% gnl|uv|JX310868.1:10962-11074 Cloning vector pJAK12-Blue 44.5 0.068 100% gnl|uv|EF025088.1:899-1007 Cloning vector pGT2 44.5 0.068 100% gnl|uv|NGB00534.1:1-40 454 Life Sciences GS FLX Titanium MID-1... 44.5 0.068 100% gnl|uv|NGB00805.1:1-63 Illumina TruSeq Small RNA Sample Prep K... 44.5 0.068 100% gnl|uv|U46019.1:612-745 Cloning vector pCRSCRIPT Direct 44.5 0.068 100% gnl|uv|EF512631.1:2093-2503 Cloning vector pTrueBlue 44.5 0.068 100% gnl|uv|KF718992.1:2899-2997 Cloning vector pGGC014 42.5 0.27 100% gnl|uv|KF718992.1:2226-2300 Cloning vector pGGC014 42.5 0.27 100% gnl|uv|AY568055.1:2172-2270 Cloning vector pAGRIKOLA 42.5 0.27 100% gnl|uv|EF442785.1:5066-5116 Expression vector pET28a-LIC 42.5 0.27 100% gnl|uv|AB777652.1:5733-7306-49 Cloning vector pRMTn-Gm DNA 42.5 0.27 100% gnl|uv|AB777652.1:4679-4776 Cloning vector pRMTn-Gm DNA 42.5 0.27 100% gnl|uv|U02428.1:1094-1186 Cloning vector pDR2 42.5 0.27 100% gnl|uv|U30496.1:3902-4000 Cloning vector pAS2 42.5 0.27 100% gnl|uv|M28247.1:3560-3670 Retroviral vector pLNCX 42.5 0.27 100% gnl|uv|U19282.1:622-719 Cloning vector pGFP-N2 green fluoresce... 42.5 0.27 100% gnl|uv|U36201.1:753-867 Cloning vector pRSGFP-C1, with green f... 42.5 0.27 100% gnl|uv|U43611.1:3756-3804-48 Cloning vector pMC1neo 42.5 0.27 100% gnl|uv|U43611.1:1744-1838 Cloning vector pMC1neo 42.5 0.27 100% gnl|uv|U89963.1:897-988 Cloning vector pVP16 42.5 0.27 100% gnl|uv|U14626.1:972-1062 Cloning vector pSVSport1 beta-lactama... 42.5 0.27 100% gnl|uv|X65325.2:2947-3044 Cloning vector pGL2-Enhancer 42.5 0.27 100% gnl|uv|AF087042.1:5779-5825-49 Cloning vector pCALnFLAG 42.5 0.27 100% gnl|uv|AF087042.1:276-559 Cloning vector pCALnFLAG 42.5 0.27 100% gnl|uv|AF087042.1:142-235 Cloning vector pCALnFLAG 42.5 0.27 100% gnl|uv|X65326.2:2876-2973 Cloning vector pGL2-Promoter 42.5 0.27 100% gnl|uv|X65326.2:219-287 Cloning vector pGL2-Promoter 42.5 0.27 100% gnl|uv|X65334.2:5448-5545 Cloning vector pALTER(R)-1 42.5 0.27 100% gnl|uv|X65321.2:2434-2531 Cloning vector pCAT-Control 42.5 0.27 100% gnl|uv|AF067196.1:144-280 Cloning vector PCMV6-XL4 42.5 0.27 100% gnl|uv|X65320.2:353-451 Cloning vector pCAT-Promoter 42.5 0.27 100% gnl|uv|AF072997.1:628-756 Cloning vector pCMVTAG3a 42.5 0.27 100% gnl|uv|AF076778.1:697-787 Cloning vector pCMVTAG5c 42.5 0.27 100% gnl|uv|AF076777.1:696-787 Cloning vector pCMVTAG5b 42.5 0.27 100% gnl|uv|U16857.1:2009-2109 Fusion cloning vector pTRXFUS 42.5 0.27 100% gnl|uv|U13843.1:12459-12516-49 pBPV cloning vector 42.5 0.27 100% gnl|uv|U47120.2:611-715 Cloning vector pCI-neo, mammalian expr... 42.5 0.27 100% gnl|uv|U13863.1:1-69 pPL-Lambda cloning vector 42.5 0.27 100% gnl|uv|U13859.1:5051-5094-49 pKK232-8 cloning vector 42.5 0.27 100% gnl|uv|NGB00199.1:1-58 NotI oligo-dT primer used in I.M.A.G.E.... 42.5 0.27 100% gnl|uv|NGB00352.1:1-151 Lawrist4 multiple cloning site 42.5 0.27 100% gnl|uv|D16587.1:1-258 Unidentified cloning vector pNTT104 DNA,... 42.5 0.27 100% gnl|uv|D10669.1:1-64 Unidentified cloning vector rpsL gene for... 42.5 0.27 100% gnl|uv|L08862.1:1-2039 pE194 cloning vector 42.5 0.27 100% gnl|uv|L08857.1:1764-1865 pBR327par cloning vector (more stabl... 42.5 0.27 100% gnl|uv|L08857.1:1382-1491 pBR327par cloning vector (more stabl... 42.5 0.27 100% gnl|uv|AY712951.1:1127-1227 Trimethoprim resistance FRT vector... 42.5 0.27 100% ALIGNMENTS >gnl|uv|X52328.1:605-699 pBluescript II SK(+) vector DNA, phagemid excised from lambda ZAPII Length=95 Score = 84.6 bits (42), Expect = 6e-14 Identities = 12/49 (24%), Gaps = 1/49 (2%) Strand=Plus/Plus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 ||| | | | | | ||| | Sbjct 27 CGACTCACTATAGGGCGAATTG-GGTACCGGGCCCCCCCTCGAGGTCGA 74 >gnl|uv|AF025846.2:711-806 Co-reporter vector pRL-TK Length=96 Score = 80.6 bits (40), Expect = 9e-13 Identities = 0/47 (0%), Gaps = 1/47 (2%) Strand=Plus/Plus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAGGG 1055 Sbjct 835 ----------------------------------------------- 880 >gnl|uv|DQ092493.1:7097-7193 Cloning vector pCYPAC7 Length=97 Score = 80.6 bits (40), Expect = 9e-13 Identities = 15/47 (32%), Gaps = 1/47 (2%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAGGG 1055 || | | | | | | ||| | | || Sbjct 46 ACCAACTCAGGAAGGCGGGCAA-CGTATTTAAGCGATGAGTGGAAAT 1 Score = 42.5 bits (21), Expect = 0.27 Identities = 0/21 (0%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 12 GGGcccccccTCGAGGTCGAC 32 Sbjct 154 --------------------- 134 >gnl|uv|NGB00028.1:2102-2197 New England BioLabs cloning vector pGPS3 Length=96 Score = 78.6 bits (39), Expect = 4e-12 Identities = 9/46 (20%), Gaps = 1/46 (2%) Strand=Plus/Minus Query 1012 GCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | || ||| | | | Sbjct 115 --------------------GATCCGGATGCCATTTCATTACCTCT 71 >gnl|uv|L08785.1:411-506 BlueScribe KS Plus cloning vector Length=96 Score = 78.6 bits (39), Expect = 4e-12 Identities = 16/46 (35%), Gaps = 1/46 (2%) Strand=Plus/Plus Query 1012 GCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 || | | | | || || | | |||| Sbjct 1 GCGTAACCACCACACCCGC-CGCGCTTAATGCGCCGCTACAGGGCG 45 >gnl|uv|JX310867.1:571-669 Cloning vector pJAK16-Blue Length=99 Score = 76.6 bits (38), Expect = 2e-11 Identities = 16/45 (36%), Gaps = 1/45 (2%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAG 1053 | || | | | | | | | | | ||| | Sbjct 44 GGCGAAAACTCTCAAGGATCTT-ACCGCTGTTGAGATCCAGTTCG 1 >gnl|uv|U13863.1:1189-1278 pPL-Lambda cloning vector Length=90 Score = 70.6 bits (35), Expect = 1e-09 Identities = 6/42 (14%), Gaps = 1/42 (2%) Strand=Plus/Plus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGT 1050 | | | || | Sbjct 9 GTTCATTACTGAACACTCGT-CCGAGAATAACGAGTGGATCC 49 >gnl|uv|NGB00311.1:1-48 Multimer of EcoRI adaptor used in I.M.A.G.E. library Barstead MPL-RB10 and other libraries Length=48 Score = 70.6 bits (35), Expect = 1e-09 Identities = 0/42 (0%), Gaps = 1/42 (2%) Strand=Plus/Plus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGT 1050 Sbjct 300 ------------------------------------------ 340 >gnl|uv|L08957.1:2800-2870-48 pTZ19R cloning vector from PL-Pharmacia Length=119 Score = 70.6 bits (35), Expect = 1e-09 Identities = 13/42 (31%), Gaps = 1/42 (2%) Strand=Plus/Plus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGT 1050 | || | | | ||| | || | Sbjct 65 ACAATTTCCCATTCGCCATT-CAGGCTGCGCAACTGTTGGGA 105 >gnl|uv|U47120.2:791-908 Cloning vector pCI-neo, mammalian expression vector Length=118 Score = 68.6 bits (34), Expect = 4e-09 Identities = 8/41 (20%), Gaps = 1/41 (2%) Strand=Plus/Plus Query 1017 CGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | | | || Sbjct 1 CTAACGCAGTCAGT-GCTTCTGACACAACAGTCTCGAACTT 40 >gnl|uv|NGB00359.1:12916-12965 CHORI vector pCYPAC2 Length=50 Score = 68.6 bits (34), Expect = 4e-09 Identities = 9/41 (22%), Gaps = 1/41 (2%) Strand=Plus/Plus Query 1017 CGCGGTGGAGCTCCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | || | | | | | | Sbjct 1 GCGCTGAGGTCTGC-CTCGTGAAGAAGGTGTTGCTGACTCA 40 >gnl|uv|AF234314.1:7356-7407 Binary vector pCAMBIA-2201 Length=52 Score = 58.6 bits (29), Expect = 4e-06 Identities = 0/29 (0%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 344 ----------------------------- 372 >gnl|uv|U02435.1:1-65 Cloning vector pSVbeta Length=65 Score = 58.6 bits (29), Expect = 4e-06 Identities = 2/29 (7%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | Sbjct 54 AAAGTCCCCAGG----------------- 82 >gnl|uv|U67875.1:8796-9922 pESP-I yeast expression vector Length=1127 Score = 58.6 bits (29), Expect = 4e-06 Identities = 8/29 (28%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 || | | | | || Sbjct 17 TCCTCCAAAATCGGATCTGGTTCCGCGTG 45 >gnl|uv|X65320.2:561-660 Cloning vector pCAT-Promoter Length=100 Score = 58.6 bits (29), Expect = 4e-06 Identities = 7/29 (24%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 |||| ||| Sbjct 12 GAGGCTTTTTTGGAGGCCTAGGCTTTTGC 40 >gnl|uv|U13859.1:1543-1708 pKK232-8 cloning vector Length=166 Score = 58.6 bits (29), Expect = 4e-06 Identities = 13/29 (45%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | ||| | | || | | ||| Sbjct 98 CGAGGCTAGTTTACCGTATCTGTGGGGGG 70 >gnl|uv|U13859.1:128-364 pKK232-8 cloning vector Length=237 Score = 58.6 bits (29), Expect = 4e-06 Identities = 11/29 (38%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 || || || | | || | Sbjct 49 CCTGGCAGTTTATGGCGGGCGTCCTGCCC 21 >gnl|uv|NGB00268.1:1-50 NotI oligo-dT primer used in I.M.A.G.E. library Soares Nb2HF8-9w and other libraries Length=50 Score = 58.6 bits (29), Expect = 4e-06 Identities = 0/29 (0%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 89 ----------------------------- 117 >gnl|uv|NGB00406.1:262-328 Cloning Vector pT7Blue Length=67 Score = 58.6 bits (29), Expect = 4e-06 Identities = 6/29 (21%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | | | Sbjct 17 AATGGGAAATTGTAAACGTTAATATTTTG 45 >gnl|uv|U46017.1:676-780 Cloning vector pPCR-Script Amp SK(+) Length=105 Score = 58.6 bits (29), Expect = 4e-06 Identities = 11/29 (38%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | ||| || ||| Sbjct 17 CTTGATATCGAATTCCTGCAGCCCGGGGG 45 >gnl|uv|X52327.1:412-508 pBluescript II KS(+) vector DNA, phagemid excised from lambda ZAPII Length=97 Score = 58.6 bits (29), Expect = 4e-06 Identities = 0/29 (0%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 190 ----------------------------- 218 Score = 44.5 bits (22), Expect = 0.068 Identities = 0/22 (0%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 Sbjct 104 ---------------------- 83 Score = 42.5 bits (21), Expect = 0.27 Identities = 0/21 (0%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 12 GGGcccccccTCGAGGTCGAC 32 Sbjct 185 --------------------- 165 >gnl|uv|U89672.1:894-975 Cloning vector pIRES1hyg Length=82 Score = 56.6 bits (28), Expect = 2e-05 Identities = 0/28 (0%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 117 ---------------------------- 144 >gnl|uv|U14626.1:189-288 Cloning vector pSVSport1 beta-lactamase gene, complete cds Length=100 Score = 56.6 bits (28), Expect = 2e-05 Identities = 5/28 (18%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | | Sbjct 49 GCCATGGGGCGGAGAATGGGCGGAACTG 22 >gnl|uv|U78872.1:905-991 Cloning vector pGEX-6P-1 Length=87 Score = 56.6 bits (28), Expect = 2e-05 Identities = 9/28 (32%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | ||| | | Sbjct 1 TCCAAAATCGGATCTGGAAGTTCTGTTC 28 >gnl|uv|EF081457.1:96-146 Cloning vector pTARBAC6 Length=51 Score = 56.6 bits (28), Expect = 2e-05 Identities = 2/28 (7%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | Sbjct 45 AATTTCACACAGGAAACAGCTATGACCA 18 >gnl|uv|AY712953.1:1300-1416 Mini-Tn7 delivery vector pUC18R6KT-mini-Tn7T Length=117 Score = 56.6 bits (28), Expect = 2e-05 Identities = 0/28 (0%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 220 ---------------------------- 247 >gnl|uv|EF025088.1:168-276 Cloning vector pGT2 Length=109 Score = 56.6 bits (28), Expect = 2e-05 Identities = 6/28 (21%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | | | Sbjct 45 TCCCAGGGTTCCGGTGGAAAAAATGAGT 72 >gnl|uv|NGB00531.1:1-40 454 Life Sciences GS FLX Titanium MID-117 Adaptor A Length=40 Score = 56.6 bits (28), Expect = 2e-05 Identities = 0/28 (0%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 176 ---------------------------- 203 >gnl|uv|NGB00954.1:1-43 Ion Xpress Barcode 82 A Adapter Length=43 Score = 56.6 bits (28), Expect = 2e-05 Identities = 4/28 (14%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | Sbjct 32 TGGCATCTCGAT---------------- 59 >gnl|uv|NGB00806.1:1-63 Illumina TruSeq Small RNA Sample Prep Kit RNA PCR Primer Index 13 (RPI13) (Oligonucleotide sequence copyright 2007-2012 Illumina, Inc. All rights reserved.) Length=63 Score = 56.6 bits (28), Expect = 2e-05 Identities = 5/28 (18%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | | Sbjct 49 GCCAAGGAACTCCAGTCACAGTCAAATC 22 Score = 42.5 bits (21), Expect = 0.27 Identities = 4/21 (19%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 12 GGGcccccccTCGAGGTCGAC 32 | | || Sbjct 54 GAGAATTCCA----------- 74 >gnl|uv|NGB00020.1:2556-2635 New England BioLabs cloning vector pLITMUS28 Length=80 Score = 56.6 bits (28), Expect = 2e-05 Identities = 0/28 (0%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 92 ---------------------------- 119 >gnl|uv|U37573.1:702-859 Phagemid vector pBK-CMV Length=158 Score = 56.6 bits (28), Expect = 2e-05 Identities = 0/28 (0%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1030 CCAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 173 ---------------------------- 200 >gnl|uv|U02442.1:661-758 Cloning vector pADbeta Length=98 Score = 54.6 bits (27), Expect = 7e-05 Identities = 4/27 (15%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGAGGG 1055 | | | | Sbjct 27 TGTGGAGAGAAAGGCAAAGTGGATGTC 1 >gnl|uv|NGB00406.1:1-144 Cloning Vector pT7Blue Length=144 Score = 54.6 bits (27), Expect = 7e-05 Identities = 7/27 (26%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 1031 CAGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | || | | | | Sbjct 1 ATGACCATGATTACGCCAAGCTCTAAT 27 >gnl|uv|U25061.1:4526-4622 Cloning vector pBBR1MCS-5 REP, LacZ alpha peptide (lacZ alpha), and gentamicin-3-acetyltransferase genes, complete cds Length=97 Score = 52.6 bits (26), Expect = 3e-04 Identities = 7/26 (27%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1032 AGCTTTTGTTCCCTTTAGTGAGGGTT 1057 || | | | | | Sbjct 74 TGCGCGCCCGCGTTCCTGCTGGCG-- 99 >gnl|uv|AF061932.1:1400-1686 Plasposon pTnMod-STp' Length=287 Score = 52.6 bits (26), Expect = 3e-04 Identities = 6/26 (23%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1032 AGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | || || | Sbjct 94 ATTCAGCTCACCAGTTTTGAGGCAAA 119 >gnl|uv|AF061932.1:561-660 Plasposon pTnMod-STp' Length=100 Score = 52.6 bits (26), Expect = 3e-04 Identities = 7/26 (27%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1032 AGCTTTTGTTCCCTTTAGTGAGGGTT 1057 | | | | ||| Sbjct 19 TACAGATACCCACAACTCAAAGGAAA 44 >gnl|uv|NGB00968.1:1-43 Ion Xpress Barcode 96 A Adapter Length=43 Score = 52.6 bits (26), Expect = 3e-04 Identities = 0/26 (0%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1032 AGCTTTTGTTCCCTTTAGTGAGGGTT 1057 Sbjct 80 -------------------------- 55 >gnl|uv|NGB00026.1:1029-1408 New England BioLabs cloning vector pGPS2 Length=380 Score = 52.6 bits (26), Expect = 3e-04 Identities = 5/26 (19%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1032 AGCTTTTGTTCCCTTTAGTGAGGGTT 1057 || | | | Sbjct 44 GGCAGAGCTCTTACTGTCATGCCATC 69 >gnl|uv|KC847296.1:1-1293 Cloning vector pSEVA338 Length=1293 Score = 48.5 bits (24), Expect = 0.004 Identities = 0/24 (0%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 1029 CCCAGCTTTTGTTCCCTTTAGTGA 1052 Sbjct 1319 ------------------------ 1342 Score = 42.5 bits (21), Expect = 0.27 Identities = 0/21 (0%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 12 GGGcccccccTCGAGGTCGAC 32 Sbjct 1314 --------------------- 1294 >gnl|uv|U55758.1:1125-1223 Baculovirus transfer vector pBacPAK-His1, beta-lactamase (bla) gene, complete cds Length=99 Score = 46.5 bits (23), Expect = 0.017 Identities = 6/30 (20%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1009 GCCGCCACCGCGGTGGAGCTCCCAGCTTTT 1038 | | || | | Sbjct 63 TGGATCCCTGCAGGCCTCGA-GTTCGAATC 91 >gnl|uv|U02428.1:856-946 Cloning vector pDR2 Length=91 Score = 44.5 bits (22), Expect = 0.068 Identities = 4/22 (18%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 | || | Sbjct 28 TATTACGCCAGCTGGCGAAAGG 7 >gnl|uv|U02442.1:1-499 Cloning vector pADbeta Length=499 Score = 44.5 bits (22), Expect = 0.068 Identities = 8/22 (36%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 | ||| | || | Sbjct 52 ACTCGGACCACTCTGAGACGAA 73 >gnl|uv|AF092169.1:1-56 Cloning vector pNTKV1907 Length=56 Score = 44.5 bits (22), Expect = 0.068 Identities = 0/22 (0%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 Sbjct 69 ---------------------- 48 >gnl|uv|U02444.1:1-51 Cloning vector pKK388-1 Length=51 Score = 44.5 bits (22), Expect = 0.068 Identities = 0/22 (0%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 Sbjct 69 ---------------------- 48 >gnl|uv|U02441.1:1044-1210 Cloning vector pGUS N358->S Length=167 Score = 44.5 bits (22), Expect = 0.068 Identities = 4/22 (18%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 | | | | Sbjct 69 TGGTTAATCAGGAACTGTTCGC 48 >gnl|uv|U02437.1:4662-4674-49 Cloning vector pT3/T7-LUC Length=62 Score = 44.5 bits (22), Expect = 0.068 Identities = 0/22 (0%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 Sbjct 69 ---------------------- 48 >gnl|uv|U02439.1:1-220 Cloning vector pKK233-2 Length=220 Score = 44.5 bits (22), Expect = 0.068 Identities = 4/22 (18%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 | | | | Sbjct 69 TGGCTGCCTGACGCCAGAAGCA 48 >gnl|uv|AY508733.1:1609-1706 Cloning vector psiLentGene Neomycin Length=98 Score = 44.5 bits (22), Expect = 0.068 Identities = 4/22 (18%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 | | | | Sbjct 69 TTCTAGAGTTTAAACTCGAGTC 48 >gnl|uv|AF013258.1:1155-1263 Expression vector pSG5 Length=109 Score = 44.5 bits (22), Expect = 0.068 Identities = 7/22 (32%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1009 GCCGCCACCGCGGTGGAGCTCC 1030 || | | | || Sbjct 69 GCGGAAGAGTCTAGAGTCGACC 48 Database: UniVec (build 7.1) Posted date: Sep 24, 2012 1:59 PM Number of letters in database: 877,592 Number of sequences in database: 4,383 Lambda K H 1.39 0.747 1.38 Gapped Lambda K H 1.39 0.747 1.38 Matrix: blastn matrix:1 -5 Gap Penalties: Existence: 3, Extension: 3 Number of Sequences: 4383 Number of Hits to DB: 7505 Number of extensions: 243 Number of successful extensions: 243 Number of sequences better than 700: 147 Number of HSP's better than 700 without gapping: 0 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 156 Length of query: 1057 Length of database: 877592 Length adjustment: 14 Effective length of query: 1043 Effective length of database: 816230 Effective search space: 851327890 Effective search space used: 1750000000000 A: 0 X1: 11 (22.0 bits) X2: 14 (28.1 bits) X3: 49 (98.3 bits) S1: 12 (24.5 bits) S2: 16 (32.5 bits)