NCBI Blast:ref|NM

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,0
Low Complexity Filter	Yes
Filter string	L;W -t 9764;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date
Number of letters	2,647,324,996
Number of sequences	262
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	31
Effective length of query	1525
Effective length of database	2647316874
Effective search space	4037158232850
Effective search space used	4037158232850

Job Title

ref|NM_001824.5| ...

ref|NM_001824.5|

RID

A8ADWB88016 Search expires on 07-28 06:57 am

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Results for

Program

BLASTN

Program version: BLASTN 2.15.0+

Citation

Database

genomic/9764/GCA_028021215.1

See details

- organisms
Organim inclusion
Organims name

Included:

Excluded:

Query ID

- organisms
Organim inclusion	Organims name
Included:
Excluded:

NM_001824.5

Description

Homo sapiens creatine kinase, M-type (CKM), mRNA ...

Homo sapiens creatine kinase, M-type (CKM), mRNA

Molecule type

nucleic acid

Query Length

1556

Other reports

Distance tree of results MSA viewer

Reports are generated on using all sequences producing significant alignments. To generate reports on a subset of sequences, use the report links in the Descriptions tab while selecting specific sequences.

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Descriptions

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Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq CM051683.1	Eschrichtius robustus isolate mEscRob2 chromosome 19, whole genome shotgun sequence			0	422	1574	86%	3e-115	81.43%	70832381	CM051683.1
2Select seq JAQMHY010000033.1	Eschrichtius robustus isolate mEscRob2 chromosome 19, whole genome shotgun sequence			0	422	1574	86%	4e-115	81.43%	70832381	JAQMHY010000033.1

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- Alignment Scores
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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Distribution of the top 12 Blast Hits on 2 subject sequences

Query

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Eschrichtius robustus isolate mEscRob2 chromosome 19, w..

Score:279 Evalue:2.1e-72

Accession:CM051683.1

Alignment

Eschrichtius robustus isolate mEscRob2 chromosome 19, w..

Score:279 Evalue:2.4e-72

Accession:JAQMHY010000033.1

Alignment
- Alignment view
- CDS feature
- Line length:
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  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
  CDS feature: Show annotated coding region and translation. more...
  
  Line length: Number of letters to show on one line in an alignment.
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Reports
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Sequences producing significant alignments

Distribution of the top 12 Blast Hits on 2 subject sequences

Reports