NCBI Blast:ref|NP

Search Parameters
Search parameter name	Search parameter value
Program	tblastn
Word size	5
Expect value	0.05
Hitlist size	100
Gapcosts	11,1
Matrix	BLOSUM62
Low Complexity Filter	Yes
Filter string	L;
Genetic Code	1
Window Size	40
Threshold	0
Composition-based stats	2

Database
Database parameter name	Database parameter value
Posted date
Number of letters	2,647,324,996
Number of sequences	262
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.316939	0.267
K	0.136961	0.041
H	0.413421	0.14
Alpha	0.7916	1.9
Alpha_v	4.96466	42.6028
Sigma		43.6362

- organisms
Organim inclusion	Organims name
Included:
Excluded:

Descriptions

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0 sequences selected

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq CM051665.1	Eschrichtius robustus isolate mEscRob2 chromosome 1, whole genome shotgun sequence	159	1143	100%	1e-40	55.26%	200946153	CM051665.1
2Select seq CM051683.1	Eschrichtius robustus isolate mEscRob2 chromosome 19, whole genome shotgun sequence	139	762	100%	9e-34	85.33%	70832381	CM051683.1
3Select seq CM051666.1	Eschrichtius robustus isolate mEscRob2 chromosome 2, whole genome shotgun sequence	103	470	77%	8e-22	72.73%	179809113	CM051666.1
4Select seq JAQMHY010000002.1	Eschrichtius robustus isolate mEscRob2 chromosome 1, whole genome shotgun sequence	159	1143	100%	1e-40	55.26%	200946153	JAQMHY010000002.1
5Select seq JAQMHY010000033.1	Eschrichtius robustus isolate mEscRob2 chromosome 19, whole genome shotgun sequence	139	762	100%	1e-33	85.33%	70832381	JAQMHY010000033.1
6Select seq JAQMHY010000003.1	Eschrichtius robustus isolate mEscRob2 chromosome 2, whole genome shotgun sequence	103	470	77%	9e-22	72.73%	179809113	JAQMHY010000003.1

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- Show Conserved Domains
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
- 0 sequences selected
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  To select sequences, go to the Descriptions tab
Distribution of the top 52 Blast Hits on 6 subject sequences

Query

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Eschrichtius robustus isolate mEscRob2 chromosome 1, wh..

Score:108 Evalue:1.8e-23

Accession:CM051665.1

Alignment

Eschrichtius robustus isolate mEscRob2 chromosome 19, w..

Score:126 Evalue:1.9e-29

Accession:CM051683.1

Alignment

Eschrichtius robustus isolate mEscRob2 chromosome 2, wh..

Score:103 Evalue:7.9e-22

Accession:CM051666.1

Alignment

Eschrichtius robustus isolate mEscRob2 chromosome 1, wh..

Score:108 Evalue:2e-23

Accession:JAQMHY010000002.1

Alignment

Eschrichtius robustus isolate mEscRob2 chromosome 19, w..

Score:126 Evalue:2.1e-29

Accession:JAQMHY010000033.1

Alignment

Eschrichtius robustus isolate mEscRob2 chromosome 2, wh..

Score:103 Evalue:8.9e-22

Accession:JAQMHY010000003.1

Alignment
- Alignment view
- CDS feature
- Line length:
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  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
  CDS feature: Show annotated coding region and translation. more...
  
  Line length: Number of letters to show on one line in an alignment.
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  To select sequences, go to the Descriptions tab
Reports
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Filter Results

Sequences producing significant alignments

Distribution of the top 52 Blast Hits on 6 subject sequences

Reports