NCBI Blast:Suspected Viral Infection

Your search is limited to records that include: Viruses (taxid:10239)

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Jul 31, 2022 5:09 AM
Number of letters	409,387,836
Number of sequences	13,213
Entrez query	Includes: Viruses (taxid:10239) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	24
Effective length of query	51
Effective length of database	409070724
Effective search space	20862606924
Effective search space used	20862606924

Job Title

Suspected Viral Infection ...

Suspected Viral Infection

RID

EKB1R2DM013 Search expires on 09-19 00:20 am

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Results for

Program

BLASTN

Program version: BLASTN 2.15.0+

Citation

Database

refseq_genomes (2 databases)

See details

refseq_genomes - organisms
Organim inclusion
Organims name

Included: Viruses (taxid:10239)

Excluded:

Query ID

refseq_genomes - organisms
Organim inclusion	Organims name
Included:	Viruses (taxid:10239)
Excluded:

lcl|Query_47969

Description

Suspected Viral Infection ...

Suspected Viral Infection

Molecule type

dna

Query Length

Other reports

Distance tree of results MSA viewer

Reports are generated on using all sequences producing significant alignments. To generate reports on a subset of sequences, use the report links in the Descriptions tab while selecting specific sequences.

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Descriptions

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Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Scientific Name	Common Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq NC_001498.1	Measles virus, complete genome	Measles morbillivirus	NA	11234	139	139	100%	2e-32	100.00%	15894	NC_001498.1

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  The graphic is an overview of the database sequences aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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Distribution of the top 1 Blast Hits on 1 subject sequences

Query

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Measles virus, complete genome

Score:139 Evalue:2e-32

Accession:NC_001498.1

Alignment
- Alignment view
- CDS feature
- Line length:
- Help
  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
  CDS feature: Show annotated coding region and translation. more...
  
  Line length: Number of letters to show on one line in an alignment.
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  To select sequences, go to the Descriptions tab
Reports
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Sequences producing significant alignments

Distribution of the top 1 Blast Hits on 1 subject sequences

Reports