NCBI Blast:NP_005359:myoglobin isoform 1 [Homo sapiens]

Your search is limited to records that include: whales & dolphins (taxid:9721)

Search Parameters
Search parameter name	Search parameter value
Program	blastp
Word size	6
Expect value	0.05
Hitlist size	100
Gapcosts	11,1
Matrix	BLOSUM62
Filter string	F
Genetic Code	1
Window Size	40
Threshold	21
Composition-based stats	2

Database
Database parameter name	Database parameter value
Posted date	Dec 19, 2022 8:50 AM
Number of letters	69,068,680
Number of sequences	139,742
Entrez query	Includes: whales & dolphins (taxid:9721) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.316106	0.267
K	0.135259	0.041
H	0.398131	0.14
Alpha	0.7916	1.9
Alpha_v	4.96466	42.6028
Sigma		43.6362

Job Title

NP_005359:myoglobin isoform 1 [Homo sapiens] ...

NP_005359:myoglobin isoform 1 [Homo sapiens]

RID

X5XU776D016 Search expires on 03-14 23:18 pm

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Results for

Program

BLASTP

Program version: BLASTP 2.16.1+

Citation
Reference
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference - compositional score matrix adjustment
Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Database

nr_clustered(experimental)

See details

Query ID

NP_005359.1

Description

myoglobin isoform 1 [Homo sapiens] ...

myoglobin isoform 1 [Homo sapiens]

Molecule type

amino acid

Query Length

154

Other reports

Distance tree of results Multiple alignment MSA viewer

Reports are generated on using all clusters producing significant alignments. To generate reports on a subset of clusters, use the report links in the Clusters tab while selecting specific clusters.

Filter Results

Clusters

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0 clusters selected

Clusters producing significant alignments:
Select for downloading or viewing reports	New Cluster Composition Click the to see the cluster contents	New Cluster Ancestor	Representative Sequence	Scientific Name	Taxid	Max Score	Total Score	Query Cover	E value	Per. Ident	Acc. Len	Accession
1Select seq Q0KIY6.3	member(s), organism(s) 118573065( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment		RecName: Full=Myoglobin-2; AltName: Full=Nitrite reductase MB; AltName: Full=Pseudoperoxidase MB		0	275	275	100%	1e-95	85.71%	154	Q0KIY6.3
2Select seq ref\|NP_001277651.1\|	member(s), organism(s) NP_001277651.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	sperm whale	myoglobin [Physeter macrocephalus]	Physeter macrocephalus	9755	273	273	100%	4e-95	84.42%	154	NP_001277651.1
3Select seq Q0KIY9.3	member(s), organism(s) 118573068( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment		RecName: Full=Myoglobin; AltName: Full=Nitrite reductase MB; AltName: Full=Pseudoperoxidase MB		0	271	271	100%	1e-94	85.71%	154	Q0KIY9.3
4Select seq 101M_A	member(s), organism(s) 157829523( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment		Chain A, MYOGLOBIN		0	270	270	100%	1e-93	83.12%	154	101M_A
5Select seq P83682.2	member(s), organism(s) 118595758( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment		RecName: Full=Myoglobin; AltName: Full=Nitrite reductase MB; AltName: Full=Pseudoperoxidase MB		0	253	253	100%	4e-87	81.17%	154	P83682.2
6Select seq gb\|MBV97686.1\|	member(s), organism(s) MBV97686.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	grey whale	Myoglobin [Eschrichtius robustus]	Eschrichtius robustus	9764	224	224	80%	4e-76	87.10%	132	MBV97686.1
7Select seq gb\|AMN15048.1\|	member(s), organism(s) AMN15048.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	Blainville's beaked whale	myoglobin [Mesoplodon densirostris]	Mesoplodon densirostris	48708	194	194	68%	1e-64	89.62%	106	AMN15048.1
8Select seq gb\|KAB0400357.1\|	member(s), organism(s) KAB0400357.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	Fin whale	hypothetical protein E2I00_010453 [Balaenoptera physalus]	Balaenoptera physalus	9770	193	193	70%	1e-63	83.49%	153	KAB0400357.1
9Select seq NP_001071055.1	member(s), organism(s) 117606184( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment		cytoglobin [Canis lupus familiaris]		0	76.3	76.3	95%	3e-17	29.33%	183	NP_001071055.1
10Select seq ref\|XP_045381714.1\|	member(s), organism(s) XP_045381714.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	Ring-tailed lemur	cytoglobin isoform X2 [Lemur catta]	Lemur catta	9447	74.3	74.3	95%	2e-16	28.67%	200	XP_045381714.1
11Select seq gb\|TKC53449.1\|	member(s), organism(s) TKC53449.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	narwhal	hypothetical protein EI555_014904 [Monodon monoceros]	Monodon monoceros	40151	74.7	74.7	95%	3e-16	29.33%	235	TKC53449.1
12Select seq ref\|XP_032472711.1\|	member(s), organism(s) XP_032472711.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	vaquita	LOW QUALITY PROTEIN: cytoglobin [Phocoena sinus]	Phocoena sinus	42100	73.2	73.2	95%	1e-15	29.33%	269	XP_032472711.1
13Select seq XP_030693643.1	member(s), organism(s) 1746246394( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment		cytoglobin isoform X2 [Globicephala melas]		0	68.2	68.2	84%	5e-14	30.08%	200	XP_030693643.1
14Select seq XP_030693645.1	member(s), organism(s) 1746246398( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment		cytoglobin isoform X4 [Globicephala melas]		0	63.9	63.9	83%	1e-12	29.01%	189	XP_030693645.1
15Select seq gb\|KAB0400714.1\|	member(s), organism(s) KAB0400714.1( ) Reports BLAST Alignment Tree View MSA Viewer Multiple alignment	Fin whale	hypothetical protein E2I00_008341 [Balaenoptera physalus]	Balaenoptera physalus	9770	63.5	63.5	78%	1e-12	30.65%	168	KAB0400714.1

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- Show Conserved Domains
- Alignment Scores
- < 40
- 40 - 50
- 50 - 80
- 80 - 200
- >= 200
- Help
  The graphic is an overview of the database clusters aligned to the query sequence. These are represented horizontal bars colored coded by score and showing the extent of the alignment on the query sequence. Separate aligned regions on the same database sequence are connected by a thin grey line. Mousing over an alignment shows the database sequence title. Clicking an alignment displays a box with more details about the alignment and link to the sequence alignment itself in the Alignments section of the report.
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  To select clusters, go to the Clusters tab
Putative conserved domains have been detected, click on the image below for detailed results.

Distribution of the top 15 Blast Hits on 15 subject clusters

Query

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RecName: Full=Myoglobin-2; AltName: Full=Nitrite reduct..

Score:275 Evalue:9.6e-96

Accession:Q0KIY6.3

Alignment

myoglobin [Physeter macrocephalus]

Score:273 Evalue:3.5e-95

Accession:NP_001277651.1

Alignment

RecName: Full=Myoglobin; AltName: Full=Nitrite reductas..

Score:271 Evalue:1.4e-94

Accession:Q0KIY9.3

Alignment

Chain A, MYOGLOBIN

Score:270 Evalue:1e-93

Accession:101M_A

Alignment

RecName: Full=Myoglobin; AltName: Full=Nitrite reductas..

Score:253 Evalue:4.1e-87

Accession:P83682.2

Alignment

Myoglobin [Eschrichtius robustus]

Score:224 Evalue:4.4e-76

Accession:MBV97686.1

Alignment

myoglobin [Mesoplodon densirostris]

Score:194 Evalue:1.1e-64

Accession:AMN15048.1

Alignment

hypothetical protein E2I00_010453 [Balaenoptera physalu..

Score:193 Evalue:1e-63

Accession:KAB0400357.1

Alignment

cytoglobin [Canis lupus familiaris]

Score:76 Evalue:3.3e-17

Accession:NP_001071055.1

Alignment

cytoglobin isoform X2 [Lemur catta]

Score:74 Evalue:2.3e-16

Accession:XP_045381714.1

Alignment

hypothetical protein EI555_014904 [Monodon monoceros]

Score:74 Evalue:3.2e-16

Accession:TKC53449.1

Alignment

LOW QUALITY PROTEIN: cytoglobin [Phocoena sinus]

Score:73 Evalue:1.5e-15

Accession:XP_032472711.1

Alignment

cytoglobin isoform X2 [Globicephala melas]

Score:68 Evalue:4.9e-14

Accession:XP_030693643.1

Alignment

cytoglobin isoform X4 [Globicephala melas]

Score:63 Evalue:1.3e-12

Accession:XP_030693645.1

Alignment

hypothetical protein E2I00_008341 [Balaenoptera physalu..

Score:63 Evalue:1.5e-12

Accession:KAB0400714.1

Alignment
- Alignment view
- CDS feature
- Line length:
- Help
  Alignment view: Choose how to view alignments. The default "pairwise" view shows how each subject cluster aligns individually to the query sequence. The "query-anchored" view shows how all subject clusters align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
  
  CDS feature: Show annotated coding region and translation. more...
  
  Line length: Number of letters to show on one line in an alignment.
- 0 clusters selected
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  To select clusters, go to the Clusters tab
Reports
- 0 clusters selected
- Help
  To select clusters, go to the Clusters tab

Filter Results

Clusters producing significant alignments

118573065()

Reports

NP_001277651.1()

Reports

118573068()

Reports

157829523()

Reports

118595758()

Reports

MBV97686.1()

Reports

AMN15048.1()

Reports

KAB0400357.1()

Reports

117606184()

Reports

XP_045381714.1()

Reports

TKC53449.1()

Reports

XP_032472711.1()

Reports

1746246394()

Reports

1746246398()

Reports

KAB0400714.1()

Reports

Distribution of the top 15 Blast Hits on 15 subject clusters

Reports

118573065(
)

NP_001277651.1(
)

118573068(
)

157829523(
)

118595758(
)

MBV97686.1(
)

AMN15048.1(
)

KAB0400357.1(
)

117606184(
)

XP_045381714.1(
)

TKC53449.1(
)

XP_032472711.1(
)

1746246394(
)

1746246398(
)

KAB0400714.1(
)