BLASTP 2.17.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.
RID: X5XU776D016
Database: clustered nr
540,216,471 sequences; 171,872,077,879 total letters
Query= NP_005359.1 myoglobin isoform 1 [Homo sapiens]
Length=154
No significant similarity found. For reasons why, click here.
Database: clustered nr
Posted date: Dec 19, 2022 8:50 AM
Number of letters in database: 69,068,680
Number of sequences in database: 139,742
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 139742
Number of Hits to DB: 3725
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 0.5: 0
Number of HSP's better than 0.5 without gapping: 0
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 0
Length of query: 154
Length of database: 69068680
Length adjustment: 102
Effective length of query: 52
Effective length of database: 54814996
Effective search space: 2850379792
Effective search space used: 2850379792
T: 21
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 73 (32.7 bits)
ka-blk-alpha gapped: 1.9
ka-blk-alpha ungapped: 0.7916
ka-blk-alpha_v gapped: 42.6028
ka-blk-alpha_v ungapped: 4.96466
ka-blk-sigma gapped: 43.6362