Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
CAA98678.1
RRP42 [Saccharomyces cerevisiae]
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Query length:
265 aa
DOMAINS: and other(s) domains
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Query: RRP42
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3'-5'-exoribonuclease family protein ease family protein [Arabidopsis thaliana] >gb|AAG40370.1| AT3g07750 [Arabidopsis thaliana] >gb|AAW28551.1| At3g07750 [Arabidopsis thaliana] >gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
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3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >ref|NP_566318.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >gb|AAG40370.1| AT3g07750 [Arabidopsis thaliana] >gb|AAW28551.1| At3g07750 [Arabidopsis thaliana] >gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
286 aa protein
accession:NP_001319497.1
exosome complex component RRP42 omplex component RRP42-like [Glycine soja] >gb|KAH1059118.1| hypothetical protein GYH30_003263 [Glycine max] >gb|KAH1260499.1| Exosome complex component RRP42 [Glycine max] >gb|KRH70123.1| hypothetical protein GLYMA_02G070100v4 [Glycine max]
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exosome complex component RRP42 [Glycine max] >ref|XP_028198862.1| exosome complex component RRP42-like [Glycine soja] >gb|KAH1059118.1| hypothetical protein GYH30_003263 [Glycine max] >gb|KAH1260499.1| Exosome complex component RRP42 [Glycine max] >gb|KRH70123.1| hypothetical protein GLYMA_02G070100v4 [Glycine max]
286 aa protein
accession:XP_003518190.1
exosome complex component RRP42 omplex component RRP42-like [Glycine soja] >gb|KHN32745.1| Exosome complex component RRP42 [Glycine soja] >gb|KRH08467.1| hypothetical protein GLYMA_16G151700v4 [Glycine max] >gb|RZB61173.1| Exosome complex component RRP42 [Glycine soja]
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exosome complex component RRP42 [Glycine max] >ref|XP_028205351.1| exosome complex component RRP42-like [Glycine soja] >gb|KHN32745.1| Exosome complex component RRP42 [Glycine soja] >gb|KRH08467.1| hypothetical protein GLYMA_16G151700v4 [Glycine max] >gb|RZB61173.1| Exosome complex component RRP42 [Glycine soja]
286 aa protein
accession:XP_003548054.1
Exoribonuclease phosphorolytic domain-containing protein containing protein [Caenorhabditis elegans]
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Exoribonuclease phosphorolytic domain-containing protein [Caenorhabditis elegans] >emb|CAB07377.2| Exoribonuclease phosphorolytic domain-containing protein [Caenorhabditis elegans]
312 aa protein
accession:NP_001370048.1
putative exosome subunit Rrp42 xosome complex component rrp42; AltName: Full=Ribosomal RNA-processing protein 42 [Schizosaccharomyces pombe 972h-] >emb|CAA19030.1| exosome subunit Rrp42 [Schizosaccharomyces pombe]
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putative exosome subunit Rrp42 [Schizosaccharomyces pombe] >sp|O60124.1| RecName: Full=Exosome complex component rrp42; AltName: Full=Ribosomal RNA-processing protein 42 [Schizosaccharomyces pombe 972h-] >emb|CAA19030.1| exosome subunit Rrp42 [Schizosaccharomyces pombe]
299 aa protein
accession:NP_596759.1
DOMAINS: and other(s) domains
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3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >ref|NP_566318.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >gb|AAG40370.1| AT3g07750 [Arabidopsis thaliana] >gb|AAW28551.1| At3g07750 [Arabidopsis thaliana] >gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] >dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
286 aa protein
accession:NP_001319497.1
exosome complex component RRP42 [Glycine max] >ref|XP_028198862.1| exosome complex component RRP42-like [Glycine soja] >gb|KAH1059118.1| hypothetical protein GYH30_003263 [Glycine max] >gb|KAH1260499.1| Exosome complex component RRP42 [Glycine max] >gb|KRH70123.1| hypothetical protein GLYMA_02G070100v4 [Glycine max]
286 aa protein
accession:XP_003518190.1
exosome complex component RRP42 [Glycine max] >ref|XP_028205351.1| exosome complex component RRP42-like [Glycine soja] >gb|KHN32745.1| Exosome complex component RRP42 [Glycine soja] >gb|KRH08467.1| hypothetical protein GLYMA_16G151700v4 [Glycine max] >gb|RZB61173.1| Exosome complex component RRP42 [Glycine soja]
286 aa protein
accession:XP_003548054.1
Exoribonuclease phosphorolytic domain-containing protein [Caenorhabditis elegans] >emb|CAB07377.2| Exoribonuclease phosphorolytic domain-containing protein [Caenorhabditis elegans]
312 aa protein
accession:NP_001370048.1
putative exosome subunit Rrp42 [Schizosaccharomyces pombe] >sp|O60124.1| RecName: Full=Exosome complex component rrp42; AltName: Full=Ribosomal RNA-processing protein 42 [Schizosaccharomyces pombe 972h-] >emb|CAA19030.1| exosome subunit Rrp42 [Schizosaccharomyces pombe]
299 aa protein
accession:NP_596759.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 68.2 | 68.2 | 81% | 5e-12 | 27.54% | NP_001319497.1 | |
| 2 | 65.9 | 65.9 | 81% | 3e-11 | 25.21% | XP_003518190.1 | |
| 3 | 56.6 | 56.6 | 50% | 5e-08 | 32.62% | NP_596759.1 | |
| 4 | 45.8 | 45.8 | 81% | 2e-04 | 23.77% | NP_001370048.1 | |
| 5 | 63.9 | 63.9 | 81% | 1e-10 | 25.94% | XP_003548054.1 |