Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
1JK8_A
Chain A, MHC class II HLA-DQ8 [Homo sapiens]
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Query length:
181 aa
DOMAINS: and other(s) domains
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uncharacterized protein LOC368816 precursor erio] >gb|AAI65072.1| Si:busm1-194e12.8 protein [Danio rerio]
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uncharacterized protein LOC368816 precursor [Danio rerio] >gb|AAH85418.1| Si:busm1-194e12.8 [Danio rerio] >gb|AAI65072.1| Si:busm1-194e12.8 protein [Danio rerio]
236 aa protein
accession:NP_001007430.1
histocompatibility 2, class II antigen A, alpha precursor ity antigen, A-B alpha chain; Short=IAalpha; Flags: Precursor [Mus musculus] >gb|AAB81529.1| IAalpha subunit [Mus musculus] >gb|AAC05285.1| major histocompatibility protein class II alpha chain [Mus musculus] >gb|AAH19721.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|AAH31711.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|EDL10267.1| histocompatibility 2, class II antigen A, alpha [Mus musculus]
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histocompatibility 2, class II antigen A, alpha precursor [Mus musculus] >sp|P14434.2| RecName: Full=H-2 class II histocompatibility antigen, A-B alpha chain; Short=IAalpha; Flags: Precursor [Mus musculus] >gb|AAB81529.1| IAalpha subunit [Mus musculus] >gb|AAC05285.1| major histocompatibility protein class II alpha chain [Mus musculus] >gb|AAH19721.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|AAH31711.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|EDL10267.1| histocompatibility 2, class II antigen A, alpha [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X3 pha 1 chain isoform X4 [Homo sapiens]
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X3 [Homo sapiens] >ref|XP_054186555.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X4 [Homo sapiens]
207 aa protein
accession:XP_054186264.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 >gb|AAA59759.1| MHC class II HLA-DQ-alpha [Homo sapiens] >gb|AAI57866.1| Similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) [Homo sapiens] >gb|AAU87987.1| MHC class II antigen [Homo sapiens] >gb|AHW47921.1| MHC class II antigen [Homo sapiens]
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAA59756.1| MHC HLA-DQ alpha precursor, partial [Homo sapiens] >gb|AAA59759.1| MHC class II HLA-DQ-alpha [Homo sapiens] >gb|AAI57866.1| Similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) [Homo sapiens] >gb|AAU87987.1| MHC class II antigen [Homo sapiens] >gb|AHW47921.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054187296.1
Query: Chain A, MHC class II HLA-DQ8
...
Chain A, MHC class II HLA-DQ8 [Homo sapiens]
181 aa protein
accession:1JK8_A
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 MHC class II antigen [Homo sapiens] >gb|ANG08768.1| MHC class II antigen [Homo sapiens] >gb|ANG08769.1| MHC class II antigen [Homo sapiens] >gb|AUV50121.1| MHC class II antigen [Homo sapiens]
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAU87972.1| MHC class II antigen [Homo sapiens] >gb|AEP60146.1| MHC class II antigen [Homo sapiens] >gb|ANG08768.1| MHC class II antigen [Homo sapiens] >gb|ANG08769.1| MHC class II antigen [Homo sapiens] >gb|AUV50121.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054186783.1
DOMAINS: and other(s) domains
...
uncharacterized protein LOC368816 precursor [Danio rerio] >gb|AAH85418.1| Si:busm1-194e12.8 [Danio rerio] >gb|AAI65072.1| Si:busm1-194e12.8 protein [Danio rerio]
236 aa protein
accession:NP_001007430.1
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus] >sp|P14434.2| RecName: Full=H-2 class II histocompatibility antigen, A-B alpha chain; Short=IAalpha; Flags: Precursor [Mus musculus] >gb|AAB81529.1| IAalpha subunit [Mus musculus] >gb|AAC05285.1| major histocompatibility protein class II alpha chain [Mus musculus] >gb|AAH19721.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|AAH31711.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|EDL10267.1| histocompatibility 2, class II antigen A, alpha [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X3 [Homo sapiens] >ref|XP_054186555.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X4 [Homo sapiens]
207 aa protein
accession:XP_054186264.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAA59756.1| MHC HLA-DQ alpha precursor, partial [Homo sapiens] >gb|AAA59759.1| MHC class II HLA-DQ-alpha [Homo sapiens] >gb|AAI57866.1| Similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) [Homo sapiens] >gb|AAU87987.1| MHC class II antigen [Homo sapiens] >gb|AHW47921.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054187296.1
Chain A, MHC class II HLA-DQ8 [Homo sapiens]
181 aa protein
accession:1JK8_A
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAU87972.1| MHC class II antigen [Homo sapiens] >gb|AEP60146.1| MHC class II antigen [Homo sapiens] >gb|ANG08768.1| MHC class II antigen [Homo sapiens] >gb|ANG08769.1| MHC class II antigen [Homo sapiens] >gb|AUV50121.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054186783.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
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1 | 379 | 379 | 100% | 1e-134 | 100.00% | XP_054186783.1 | |
2 | 276 | 276 | 99% | 7e-94 | 70.56% | NP_034508.2 | |
3 | 92.8 | 92.8 | 85% | 2e-22 | 35.44% | NP_001007430.1 | |
4 | 377 | 377 | 100% | 1e-133 | 99.45% | XP_054187296.1 | |
5 | 352 | 352 | 98% | 2e-124 | 95.51% | XP_054186264.1 |