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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query: NP_417068.1 RNA polymerase sigma factor RpoE [Escherichia coli str. K-12 substr. MG1655] ... Query length: 191 aa
sigma-70 family RNA polymerase sigma factor factor [Thermotoga petrophila] >gb|KUK33299.1| MAG: RNA polymerase sigma factor [Thermotoga sp. 47_83] >gb|AAD36665.1| RNA polymerase sigma-E factor [Thermotoga maritima MSB8] >gb|ADA67294.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermotoga petrophila RKU-10] >gb|AGL50530.1| RNA polymerase sigma factor RpoE [Thermotoga maritima MSB8] ...
sigma-70 family RNA polymerase sigma factor [Thermotoga] >gb|KUK22893.1| MAG: RNA polymerase sigma factor [Thermotoga petrophila] >gb|KUK33299.1| MAG: RNA polymerase sigma factor [Thermotoga sp. 47_83] >gb|AAD36665.1| RNA polymerase sigma-E factor [Thermotoga maritima MSB8] >gb|ADA67294.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermotoga petrophila RKU-10] >gb|AGL50530.1| RNA polymerase sigma factor RpoE [Thermotoga maritima MSB8]
189 aa protein
accession:WP_004082042.1
RNA polymerase sigma factor SigW e ECF(extracytoplasmic function)-type sigma factor W [Bacillus subtilis subsp. subtilis str. 168] >sp|Q45585.1| RecName: Full=ECF RNA polymerase sigma factor SigW; Short=ECF sigma factor SigW; AltName: Full=Alternative RNA polymerase sigma factor SigW; AltName: Full=RNA polymerase sigma-W factor; Short=Sigma-W factor [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUQ|A Chain A, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUQ|B Chain B, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUR|A Chain A, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUR|B Chain B, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >gb|QDD67908.1| SigW [Cloning vector pSKA538] >gb|QDD67914.1| SigW [Cloning vector pSKA539] >gb|QDD67921.1| SigW [Cloning vector pSKA562] >gb|QDD67929.1| SigW [Cloning vector pSKA563] >gb|QDD67936.1| SigW [Cloning vector pSKA570] >gb|QDD67944.1| SigW [Cloning vector pSKA571] >gb|QDD67951.1| SigW [Cloning vector pSKA571-p15A] >gb|QPB77319.1| sigW [Cloning vector pGLM177(P_EF1a-sigW)] >dbj|BAM49103.1| RNA polymerase sigma factor SigW [Bacillus subtilis BEST7613] ...
RNA polymerase sigma factor SigW [Bacillales] >ref|NP_388054.1| RNA polymerase ECF(extracytoplasmic function)-type sigma factor W [Bacillus subtilis subsp. subtilis str. 168] >sp|Q45585.1| RecName: Full=ECF RNA polymerase sigma factor SigW; Short=ECF sigma factor SigW; AltName: Full=Alternative RNA polymerase sigma factor SigW; AltName: Full=RNA polymerase sigma-W factor; Short=Sigma-W factor [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUQ|A Chain A, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUQ|B Chain B, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUR|A Chain A, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUR|B Chain B, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >gb|QDD67908.1| SigW [Cloning vector pSKA538] >gb|QDD67914.1| SigW [Cloning vector pSKA539] >gb|QDD67921.1| SigW [Cloning vector pSKA562] >gb|QDD67929.1| SigW [Cloning vector pSKA563] >gb|QDD67936.1| SigW [Cloning vector pSKA570] >gb|QDD67944.1| SigW [Cloning vector pSKA571] >gb|QDD67951.1| SigW [Cloning vector pSKA571-p15A] >gb|QPB77319.1| sigW [Cloning vector pGLM177(P_EF1a-sigW)] >dbj|BAM49103.1| RNA polymerase sigma factor SigW [Bacillus subtilis BEST7613]
187 aa protein
accession:WP_003234958.1
sigma-70 family RNA polymerase sigma factor ...
sigma-70 family RNA polymerase sigma factor [Synechocystis salina]
223 aa protein
accession:WP_338116516.1
RNA polymerase sigma factor RpoE e sigma factor AlgU [Pseudomonas aeruginosa PAO1] >sp|Q06198.1| RecName: Full=RNA polymerase sigma-H factor; AltName: Full=Sigma-30 [Pseudomonas aeruginosa PAO1] >pdb|6IN7|B Chain B, RNA polymerase sigma-H factor [Pseudomonas aeruginosa PAO1] >gb|EAZ56567.1| sigma factor AlgU [Pseudomonas aeruginosa C3719] >gb|EAZ62458.1| sigma factor AlgU [Pseudomonas aeruginosa 2192] >gb|EOQ81049.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA02] >gb|EQL41973.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA03] >gb|ESR72606.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA05] >gb|ETU86091.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa BWHPSA048] >gb|EVT87296.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA09] >gb|KEA22640.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C1913C] >gb|KEA23352.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C0324C] >gb|KEA25077.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C2773C] >gb|KFB19967.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PGPR2] >gb|MBQ9381268.1| RNA polymerase sigma factor RpoE [Pseudomonas sp.] >gb|MDG0900586.1| RNA polymerase sigma factor RpoE [Pseudomonas sp. L01] >emb|CDI88859.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PA38182] >emb|SAJ14181.1| RNA polymerase sigma-E factor [Enterobacter cloacae] >emb|SCZ17914.1| Sigma-24 [Acinetobacter baumannii] >emb|VEE47816.1| RNA polymerase sigma factor AlgU [Pseudomonas fluorescens] >tpg|HCL2590651.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa C40A] >tpg|HCL2636810.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 3C2A] >tpg|HCL2711289.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa EF8E] >tpg|HCL2747056.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 449A] >tpg|HCL2780030.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa AC9A] >tpg|HCL2787406.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 1BAE] >tpg|HCL2792862.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 7D9A] >tpg|HCL2910009.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 059A] >tpg|HCL3101921.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa AF9A] ...
RNA polymerase sigma factor RpoE [Pseudomonas] >ref|NP_249453.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PAO1] >sp|Q06198.1| RecName: Full=RNA polymerase sigma-H factor; AltName: Full=Sigma-30 [Pseudomonas aeruginosa PAO1] >pdb|6IN7|B Chain B, RNA polymerase sigma-H factor [Pseudomonas aeruginosa PAO1] >gb|EAZ56567.1| sigma factor AlgU [Pseudomonas aeruginosa C3719] >gb|EAZ62458.1| sigma factor AlgU [Pseudomonas aeruginosa 2192] >gb|EOQ81049.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA02] >gb|EQL41973.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA03] >gb|ESR72606.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA05] >gb|ETU86091.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa BWHPSA048] >gb|EVT87296.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA09] >gb|KEA22640.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C1913C] >gb|KEA23352.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C0324C] >gb|KEA25077.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C2773C] >gb|KFB19967.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PGPR2] >gb|MBQ9381268.1| RNA polymerase sigma factor RpoE [Pseudomonas sp.] >gb|MDG0900586.1| RNA polymerase sigma factor RpoE [Pseudomonas sp. L01] >emb|CDI88859.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PA38182] >emb|SAJ14181.1| RNA polymerase sigma-E factor [Enterobacter cloacae] >emb|SCZ17914.1| Sigma-24 [Acinetobacter baumannii] >emb|VEE47816.1| RNA polymerase sigma factor AlgU [Pseudomonas fluorescens] >tpg|HCL2590651.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa C40A] >tpg|HCL2636810.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 3C2A] >tpg|HCL2711289.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa EF8E] >tpg|HCL2747056.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 449A] >tpg|HCL2780030.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa AC9A] >tpg|HCL2787406.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 1BAE] >tpg|HCL2792862.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 7D9A] >tpg|HCL2910009.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 059A] >tpg|HCL3101921.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa AF9A]
193 aa protein
accession:WP_003085543.1
Query: RNA polymerase sigma factor RpoE ...
RNA polymerase sigma factor RpoE [Escherichia coli str. K-12 substr. MG1655]
191 aa protein
accession:NP_417068.1
RNA polymerase sigma factor RpoE sigma factor 24 RpoE [Shewanella oneidensis MR-1] >gb|MCG9962704.1| RNA polymerase sigma factor RpoE [Shewanella sp. PS-2] >gb|MDX5996822.1| RNA polymerase sigma factor RpoE [Shewanella oneidensis] >gb|MEE2026538.1| ECF RNA polymerase sigma-E factor [Shewanella oneidensis] >gb|QKG96101.1| RNA polymerase sigma factor RpoE [Shewanella oneidensis MR-1] ...
RNA polymerase sigma factor RpoE [Shewanella] >gb|AAN54407.1| RNA polymerase sigma factor 24 RpoE [Shewanella oneidensis MR-1] >gb|MCG9962704.1| RNA polymerase sigma factor RpoE [Shewanella sp. PS-2] >gb|MDX5996822.1| RNA polymerase sigma factor RpoE [Shewanella oneidensis] >gb|MEE2026538.1| ECF RNA polymerase sigma-E factor [Shewanella oneidensis] >gb|QKG96101.1| RNA polymerase sigma factor RpoE [Shewanella oneidensis MR-1]
192 aa protein
accession:WP_011071551.1

Descriptions

Best hits

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Best hits producing significant alignments
Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession
1
RNA polymerase sigma factor RpoE [Shewanella] >gb|AAN54407.1| RNA polymerase sigma factor 24 RpoE [Shewanella oneidensis MR-1] >gb|MCG9962704.1| RNA polymerase sigma factor RpoE [Shewanella sp. PS-2] >gb|MDX5996822.1| RNA polymerase sigma factor RpoE [Shewanella oneidensis] >gb|MEE2026538.1| ECF RNA polymerase sigma-E factor [Shewanella oneidensis] >gb|QKG96101.1| RNA polymerase sigma factor RpoE [Shewanella oneidensis MR-1]
288 288 98% 2e-9972.63% WP_011071551.1
2
RNA polymerase sigma factor RpoE [Pseudomonas] >ref|NP_249453.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PAO1] >sp|Q06198.1| RecName: Full=RNA polymerase sigma-H factor; AltName: Full=Sigma-30 [Pseudomonas aeruginosa PAO1] >pdb|6IN7|B Chain B, RNA polymerase sigma-H factor [Pseudomonas aeruginosa PAO1] >gb|EAZ56567.1| sigma factor AlgU [Pseudomonas aeruginosa C3719] >gb|EAZ62458.1| sigma factor AlgU [Pseudomonas aeruginosa 2192] >gb|EOQ81049.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA02] >gb|EQL41973.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA03] >gb|ESR72606.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA05] >gb|ETU86091.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa BWHPSA048] >gb|EVT87296.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa VRFPA09] >gb|KEA22640.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C1913C] >gb|KEA23352.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C0324C] >gb|KEA25077.1| RNA polymerase sigma-H factor [Pseudomonas aeruginosa C2773C] >gb|KFB19967.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PGPR2] >gb|MBQ9381268.1| RNA polymerase sigma factor RpoE [Pseudomonas sp.] >gb|MDG0900586.1| RNA polymerase sigma factor RpoE [Pseudomonas sp. L01] >emb|CDI88859.1| RNA polymerase sigma factor AlgU [Pseudomonas aeruginosa PA38182] >emb|SAJ14181.1| RNA polymerase sigma-E factor [Enterobacter cloacae] >emb|SCZ17914.1| Sigma-24 [Acinetobacter baumannii] >emb|VEE47816.1| RNA polymerase sigma factor AlgU [Pseudomonas fluorescens] >tpg|HCL2590651.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa C40A] >tpg|HCL2636810.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 3C2A] >tpg|HCL2711289.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa EF8E] >tpg|HCL2747056.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 449A] >tpg|HCL2780030.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa AC9A] >tpg|HCL2787406.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 1BAE] >tpg|HCL2792862.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 7D9A] >tpg|HCL2910009.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa 059A] >tpg|HCL3101921.1| RNA polymerase sigma factor RpoE [Pseudomonas aeruginosa AF9A]
261 261 99% 7e-8965.97% WP_003085543.1
3
RNA polymerase sigma factor SigW [Bacillales] >ref|NP_388054.1| RNA polymerase ECF(extracytoplasmic function)-type sigma factor W [Bacillus subtilis subsp. subtilis str. 168] >sp|Q45585.1| RecName: Full=ECF RNA polymerase sigma factor SigW; Short=ECF sigma factor SigW; AltName: Full=Alternative RNA polymerase sigma factor SigW; AltName: Full=RNA polymerase sigma-W factor; Short=Sigma-W factor [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUQ|A Chain A, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUQ|B Chain B, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUR|A Chain A, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >pdb|5WUR|B Chain B, ECF RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis str. 168] >gb|QDD67908.1| SigW [Cloning vector pSKA538] >gb|QDD67914.1| SigW [Cloning vector pSKA539] >gb|QDD67921.1| SigW [Cloning vector pSKA562] >gb|QDD67929.1| SigW [Cloning vector pSKA563] >gb|QDD67936.1| SigW [Cloning vector pSKA570] >gb|QDD67944.1| SigW [Cloning vector pSKA571] >gb|QDD67951.1| SigW [Cloning vector pSKA571-p15A] >gb|QPB77319.1| sigW [Cloning vector pGLM177(P_EF1a-sigW)] >dbj|BAM49103.1| RNA polymerase sigma factor SigW [Bacillus subtilis BEST7613]
104 104 93% 3e-2736.61% WP_003234958.1
4
sigma-70 family RNA polymerase sigma factor [Thermotoga] >gb|KUK22893.1| MAG: RNA polymerase sigma factor [Thermotoga petrophila] >gb|KUK33299.1| MAG: RNA polymerase sigma factor [Thermotoga sp. 47_83] >gb|AAD36665.1| RNA polymerase sigma-E factor [Thermotoga maritima MSB8] >gb|ADA67294.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermotoga petrophila RKU-10] >gb|AGL50530.1| RNA polymerase sigma factor RpoE [Thermotoga maritima MSB8]
100 100 93% 2e-2539.13% WP_004082042.1
5
sigma-70 family RNA polymerase sigma factor [Synechocystis salina]
94.4 94.4 94% 1e-2233.33% WP_338116516.1