Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_002113.2
HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens] >gb|AAU87978.1| MHC class II antigen [Homo sapiens] >gb|AAU88007.1| MHC class II antigen [Homo sapiens] >gb|AAU88022.1| MHC class II antigen [Homo sapiens] >gb|AAU88028.1| MHC class II antigen [Homo sapiens] >gb|ABA86855.1| MHC class II antigen [Homo sapiens]
...
Query length:
255 aa
DOMAINS: and other(s) domains
...
mamu class II histocompatibility antigen, DR alpha chain-like
...
mamu class II histocompatibility antigen, DR alpha chain-like [Danio rerio]
236 aa protein
accession:XP_005167290.2
histocompatibility 2, class II antigen A, alpha precursor ity antigen, A-B alpha chain; Short=IAalpha; Flags: Precursor [Mus musculus] >gb|AAB81529.1| IAalpha subunit [Mus musculus] >gb|AAC05285.1| major histocompatibility protein class II alpha chain [Mus musculus] >gb|AAH19721.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|AAH31711.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|EDL10267.1| histocompatibility 2, class II antigen A, alpha [Mus musculus]
...
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus] >sp|P14434.2| RecName: Full=H-2 class II histocompatibility antigen, A-B alpha chain; Short=IAalpha; Flags: Precursor [Mus musculus] >gb|AAB81529.1| IAalpha subunit [Mus musculus] >gb|AAC05285.1| major histocompatibility protein class II alpha chain [Mus musculus] >gb|AAH19721.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|AAH31711.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|EDL10267.1| histocompatibility 2, class II antigen A, alpha [Mus musculus]
256 aa protein
accession:NP_034508.2
Query: HLA class II histocompatibility antigen, DQ alpha 1 chain precursor | MHC class II antigen [Homo sapiens] >gb|AAU88022.1| MHC class II antigen [Homo sapiens] >gb|AAU88028.1| MHC class II antigen [Homo sapiens] >gb|ABA86855.1| MHC class II antigen [Homo sapiens]
...
HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens] >gb|AAU87978.1| MHC class II antigen [Homo sapiens] >gb|AAU88007.1| MHC class II antigen [Homo sapiens] >gb|AAU88022.1| MHC class II antigen [Homo sapiens] >gb|AAU88028.1| MHC class II antigen [Homo sapiens] >gb|ABA86855.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:NP_002113.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 >gb|AAA59759.1| MHC class II HLA-DQ-alpha [Homo sapiens] >gb|AAI57866.1| Similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) [Homo sapiens] >gb|AAU87987.1| MHC class II antigen [Homo sapiens] >gb|AHW47921.1| MHC class II antigen [Homo sapiens]
...
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAA59756.1| MHC HLA-DQ alpha precursor, partial [Homo sapiens] >gb|AAA59759.1| MHC class II HLA-DQ-alpha [Homo sapiens] >gb|AAI57866.1| Similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) [Homo sapiens] >gb|AAU87987.1| MHC class II antigen [Homo sapiens] >gb|AHW47921.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054187296.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 MHC class II antigen [Homo sapiens] >gb|ANG08768.1| MHC class II antigen [Homo sapiens] >gb|ANG08769.1| MHC class II antigen [Homo sapiens] >gb|AUV50121.1| MHC class II antigen [Homo sapiens]
...
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAU87972.1| MHC class II antigen [Homo sapiens] >gb|AEP60146.1| MHC class II antigen [Homo sapiens] >gb|ANG08768.1| MHC class II antigen [Homo sapiens] >gb|ANG08769.1| MHC class II antigen [Homo sapiens] >gb|AUV50121.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 pha 1 chain isoform X2 [Homo sapiens] >ref|XP_054187030.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >ref|XP_054187031.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >sp|P01909.1| RecName: Full=HLA class II histocompatibility antigen, DQ alpha 1 chain; AltName: Full=DC-1 alpha chain; AltName: Full=DC-alpha; AltName: Full=HLA-DCA; AltName: Full=MHC class II DQA1; Flags: Precursor [Homo sapiens] >gb|ABM82461.1| major histocompatibility complex, class II, DQ alpha 1 [synthetic construct] >emb|SJX31386.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAB91990.1| MHC class II DC-alpha [Homo sapiens] >gb|AAH08585.1| HLA-DQA1 protein [Homo sapiens] >gb|AAU87989.1| MHC class II antigen [Homo sapiens]
...
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >ref|XP_054185777.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >ref|XP_054187030.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >ref|XP_054187031.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >sp|P01909.1| RecName: Full=HLA class II histocompatibility antigen, DQ alpha 1 chain; AltName: Full=DC-1 alpha chain; AltName: Full=DC-alpha; AltName: Full=HLA-DCA; AltName: Full=MHC class II DQA1; Flags: Precursor [Homo sapiens] >gb|ABM82461.1| major histocompatibility complex, class II, DQ alpha 1 [synthetic construct] >emb|SJX31386.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAB91990.1| MHC class II DC-alpha [Homo sapiens] >gb|AAH08585.1| HLA-DQA1 protein [Homo sapiens] >gb|AAU87989.1| MHC class II antigen [Homo sapiens]
254 aa protein
accession:XP_054185776.1
DOMAINS: and other(s) domains
...
mamu class II histocompatibility antigen, DR alpha chain-like [Danio rerio]
236 aa protein
accession:XP_005167290.2
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus] >sp|P14434.2| RecName: Full=H-2 class II histocompatibility antigen, A-B alpha chain; Short=IAalpha; Flags: Precursor [Mus musculus] >gb|AAB81529.1| IAalpha subunit [Mus musculus] >gb|AAC05285.1| major histocompatibility protein class II alpha chain [Mus musculus] >gb|AAH19721.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|AAH31711.1| Histocompatibility 2, class II antigen A, alpha [Mus musculus] >gb|EDL10267.1| histocompatibility 2, class II antigen A, alpha [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens] >gb|AAU87978.1| MHC class II antigen [Homo sapiens] >gb|AAU88007.1| MHC class II antigen [Homo sapiens] >gb|AAU88022.1| MHC class II antigen [Homo sapiens] >gb|AAU88028.1| MHC class II antigen [Homo sapiens] >gb|ABA86855.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:NP_002113.2
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAA59756.1| MHC HLA-DQ alpha precursor, partial [Homo sapiens] >gb|AAA59759.1| MHC class II HLA-DQ-alpha [Homo sapiens] >gb|AAI57866.1| Similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) [Homo sapiens] >gb|AAU87987.1| MHC class II antigen [Homo sapiens] >gb|AHW47921.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054187296.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >gb|AAU87972.1| MHC class II antigen [Homo sapiens] >gb|AEP60146.1| MHC class II antigen [Homo sapiens] >gb|ANG08768.1| MHC class II antigen [Homo sapiens] >gb|ANG08769.1| MHC class II antigen [Homo sapiens] >gb|AUV50121.1| MHC class II antigen [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >ref|XP_054185777.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >ref|XP_054187030.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >ref|XP_054187031.1| HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens] >sp|P01909.1| RecName: Full=HLA class II histocompatibility antigen, DQ alpha 1 chain; AltName: Full=DC-1 alpha chain; AltName: Full=DC-alpha; AltName: Full=HLA-DCA; AltName: Full=MHC class II DQA1; Flags: Precursor [Homo sapiens] >gb|ABM82461.1| major histocompatibility complex, class II, DQ alpha 1 [synthetic construct] >emb|SJX31386.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAB91990.1| MHC class II DC-alpha [Homo sapiens] >gb|AAH08585.1| HLA-DQA1 protein [Homo sapiens] >gb|AAU87989.1| MHC class II antigen [Homo sapiens]
254 aa protein
accession:XP_054185776.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 476 | 476 | 100% | 2e-171 | 90.20% | XP_054187296.1 | |
2 | 382 | 382 | 100% | 2e-134 | 71.09% | NP_034508.2 | |
3 | 113 | 113 | 76% | 3e-29 | 30.46% | XP_005167290.2 | |
4 | 473 | 473 | 100% | 2e-170 | 89.80% | XP_054186783.1 | |
5 | 459 | 459 | 100% | 4e-165 | 89.02% | XP_054185776.1 |