Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_061981.2
nonsense-mediated mRNA decay factor SMG9 [Homo sapiens]
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Query length:
520 aa
DOMAINS: and other(s) domains
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hypothetical protein DDB_G0283447 tein DDB_G0283447 [Dictyostelium discoideum AX4]
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hypothetical protein DDB_G0283447 [Dictyostelium discoideum AX4] >gb|EAL65708.1| hypothetical protein DDB_G0283447 [Dictyostelium discoideum AX4]
690 aa protein
accession:XP_639079.1
protein SMG9 248548.1| protein SMG9-like [Glycine soja] >gb|KAG5070307.1| hypothetical protein JHK85_002684 [Glycine max] >gb|KAH1267662.1| Protein SMG9 [Glycine max] >gb|KRH77691.1| hypothetical protein GLYMA_01G228300v4 [Glycine max] >gb|RZC31400.1| Protein SMG9 isoform A [Glycine soja]
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protein SMG9 [Glycine max] >ref|XP_028248548.1| protein SMG9-like [Glycine soja] >gb|KAG5070307.1| hypothetical protein JHK85_002684 [Glycine max] >gb|KAH1267662.1| Protein SMG9 [Glycine max] >gb|KRH77691.1| hypothetical protein GLYMA_01G228300v4 [Glycine max] >gb|RZC31400.1| Protein SMG9 isoform A [Glycine soja]
392 aa protein
accession:XP_003516730.1
protein SMG9
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protein SMG9 [Danio rerio]
505 aa protein
accession:XP_001923815.2
Query: nonsense-mediated mRNA decay factor SMG9 rm X1 [Xenopus tropicalis] >ref|XP_012821684.1| protein SMG9 isoform X1 [Xenopus tropicalis] >sp|B5DDX6.1| RecName: Full=Nonsense-mediated mRNA decay factor SMG9; AltName: Full=Protein smg-9 homolog [Xenopus tropicalis] >gb|UKB36558.1| SMG9 nonsense mediated mRNA decay factor protein, partial [synthetic construct] >gb|AAI68445.1| Unknown (protein for MGC:135952) [Xenopus tropicalis] >gb|KAE8594219.1| hypothetical protein XENTR_v10019502 [Xenopus tropicalis] >gb|KAE8594220.1| hypothetical protein XENTR_v10019502 [Xenopus tropicalis]
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nonsense-mediated mRNA decay factor SMG9 [Xenopus tropicalis] >ref|XP_012821683.1| protein SMG9 isoform X1 [Xenopus tropicalis] >ref|XP_012821684.1| protein SMG9 isoform X1 [Xenopus tropicalis] >sp|B5DDX6.1| RecName: Full=Nonsense-mediated mRNA decay factor SMG9; AltName: Full=Protein smg-9 homolog [Xenopus tropicalis] >gb|UKB36558.1| SMG9 nonsense mediated mRNA decay factor protein, partial [synthetic construct] >gb|AAI68445.1| Unknown (protein for MGC:135952) [Xenopus tropicalis] >gb|KAE8594219.1| hypothetical protein XENTR_v10019502 [Xenopus tropicalis] >gb|KAE8594220.1| hypothetical protein XENTR_v10019502 [Xenopus tropicalis]
508 aa protein
accession:NP_001135618.1
Query: nonsense-mediated mRNA decay factor SMG9
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nonsense-mediated mRNA decay factor SMG9 [Homo sapiens]
520 aa protein
accession:NP_061981.2
nonsense-mediated mRNA decay factor SMG9 isoform 1 ctor SMG9 isoform 1 [Mus musculus] >sp|Q9DB90.1| RecName: Full=Nonsense-mediated mRNA decay factor SMG9 [Mus musculus] >gb|AAH34211.1| RIKEN cDNA 1500002O20 gene [Mus musculus] >gb|EDL24339.1| RIKEN cDNA 1500002O20 [Mus musculus] >dbj|BAB23829.1| unnamed protein product [Mus musculus] >dbj|BAE24745.1| unnamed protein product [Mus musculus] >dbj|BAE41275.1| unnamed protein product [Mus musculus]
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nonsense-mediated mRNA decay factor SMG9 isoform 1 [Mus musculus] >ref|NP_082323.1| nonsense-mediated mRNA decay factor SMG9 isoform 1 [Mus musculus] >sp|Q9DB90.1| RecName: Full=Nonsense-mediated mRNA decay factor SMG9 [Mus musculus] >gb|AAH34211.1| RIKEN cDNA 1500002O20 gene [Mus musculus] >gb|EDL24339.1| RIKEN cDNA 1500002O20 [Mus musculus] >dbj|BAB23829.1| unnamed protein product [Mus musculus] >dbj|BAE24745.1| unnamed protein product [Mus musculus] >dbj|BAE41275.1| unnamed protein product [Mus musculus]
520 aa protein
accession:NP_001405883.1
DOMAINS: and other(s) domains
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hypothetical protein DDB_G0283447 [Dictyostelium discoideum AX4] >gb|EAL65708.1| hypothetical protein DDB_G0283447 [Dictyostelium discoideum AX4]
690 aa protein
accession:XP_639079.1
protein SMG9 [Glycine max] >ref|XP_028248548.1| protein SMG9-like [Glycine soja] >gb|KAG5070307.1| hypothetical protein JHK85_002684 [Glycine max] >gb|KAH1267662.1| Protein SMG9 [Glycine max] >gb|KRH77691.1| hypothetical protein GLYMA_01G228300v4 [Glycine max] >gb|RZC31400.1| Protein SMG9 isoform A [Glycine soja]
392 aa protein
accession:XP_003516730.1
protein SMG9 [Danio rerio]
505 aa protein
accession:XP_001923815.2
nonsense-mediated mRNA decay factor SMG9 [Xenopus tropicalis] >ref|XP_012821683.1| protein SMG9 isoform X1 [Xenopus tropicalis] >ref|XP_012821684.1| protein SMG9 isoform X1 [Xenopus tropicalis] >sp|B5DDX6.1| RecName: Full=Nonsense-mediated mRNA decay factor SMG9; AltName: Full=Protein smg-9 homolog [Xenopus tropicalis] >gb|UKB36558.1| SMG9 nonsense mediated mRNA decay factor protein, partial [synthetic construct] >gb|AAI68445.1| Unknown (protein for MGC:135952) [Xenopus tropicalis] >gb|KAE8594219.1| hypothetical protein XENTR_v10019502 [Xenopus tropicalis] >gb|KAE8594220.1| hypothetical protein XENTR_v10019502 [Xenopus tropicalis]
508 aa protein
accession:NP_001135618.1
nonsense-mediated mRNA decay factor SMG9 [Homo sapiens]
520 aa protein
accession:NP_061981.2
nonsense-mediated mRNA decay factor SMG9 isoform 1 [Mus musculus] >ref|NP_082323.1| nonsense-mediated mRNA decay factor SMG9 isoform 1 [Mus musculus] >sp|Q9DB90.1| RecName: Full=Nonsense-mediated mRNA decay factor SMG9 [Mus musculus] >gb|AAH34211.1| RIKEN cDNA 1500002O20 gene [Mus musculus] >gb|EDL24339.1| RIKEN cDNA 1500002O20 [Mus musculus] >dbj|BAB23829.1| unnamed protein product [Mus musculus] >dbj|BAE24745.1| unnamed protein product [Mus musculus] >dbj|BAE41275.1| unnamed protein product [Mus musculus]
520 aa protein
accession:NP_001405883.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
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1 | 754 | 754 | 99% | 0.0 | 72.21% | XP_001923815.2 | |
2 | 717 | 717 | 100% | 0.0 | 72.00% | NP_061981.2 | |
3 | 713 | 713 | 100% | 0.0 | 71.43% | NP_001405883.1 | |
4 | 120 | 120 | 66% | 2e-28 | 28.33% | XP_003516730.1 | |
5 | 78.2 | 78.2 | 34% | 6e-14 | 28.70% | XP_639079.1 |