Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AAL59720.1 unknown [Vibrio cholerae] ... Query length: 92 aa

helix-turn-helix transcriptional regulator ontaining protein [Streptomyces coelicolor] >gb|QKN68018.1| helix-turn-helix domain-containing protein [Streptomyces coelicolor] >gb|TYP05933.1| helix-turn-helix protein [Streptomyces coelicolor] >gb|TYP07196.1| helix-turn-helix protein [Streptomyces coelicolor A3(2)] >gb|TYP28659.1| helix-turn-helix protein [Streptomyces coelicolor] ...

helix-turn-helix transcriptional regulator [Streptomyces coelicolor] >gb|NSL81730.1| helix-turn-helix domain-containing protein [Streptomyces coelicolor] >gb|QKN68018.1| helix-turn-helix domain-containing protein [Streptomyces coelicolor] >gb|TYP05933.1| helix-turn-helix protein [Streptomyces coelicolor] >gb|TYP07196.1| helix-turn-helix protein [Streptomyces coelicolor A3(2)] >gb|TYP28659.1| helix-turn-helix protein [Streptomyces coelicolor]

285 aa protein

accession:WP_161270158.1

Alignment Sequence Identical proteins

helix-turn-helix transcriptional regulator [Enterobacteriaceae] >ref|NP_313279.2| transcription regulator [Escherichia coli O157:H7 str. Sakai] >gb|EET3529763.1| helix-turn-helix transcriptional regulator [Escherichia coli O157:NM] >gb|EFW4743650.1| helix-turn-helix transcriptional regulator [Shigella sonnei] >gb|EFW8299214.1| helix-turn-helix transcriptional regulator [Shigella flexneri] >gb|EHU69870.1| C.AhdI domain protein [Escherichia coli DEC3E] >gb|EHU99929.1| C.AhdI domain protein [Escherichia coli DEC4C] >gb|EJY0122297.1| helix-turn-helix transcriptional regulator [Escherichia coli O116] >gb|EJY0203694.1| helix-turn-helix transcriptional regulator [Escherichia coli O113] >gb|EKG3689950.1| helix-turn-helix transcriptional regulator [Escherichia coli O2] >gb|EKW6616551.1| helix-turn-helix transcriptional regulator [Pluralibacter gergoviae] >gb|ELY6327504.1| helix-turn-helix transcriptional regulator [Cronobacter malonaticus] >gb|EMF0744379.1| helix-turn-helix transcriptional regulator [Klebsiella aerogenes] >tpg|HAT4519504.1| helix-turn-helix transcriptional regulator [Serratia marcescens] >tpg|HDG9829977.1| helix-turn-helix transcriptional regulator [Raoultella ornithinolytica] >tpg|HDV6336000.1| helix-turn-helix transcriptional regulator [Klebsiella michiganensis]

152 aa protein

accession:WP_000175313.1

Alignment Sequence Identical proteins

helix-turn-helix transcriptional regulator rotein [Clostridioides difficile DA00149] >gb|EQK84140.1| helix-turn-helix family protein [Clostridioides difficile CD127] >gb|OFU13329.1| transcriptional regulator [Clostridium sp. HMSC19D02] >gb|OFU41357.1| transcriptional regulator [Clostridium sp. HMSC19B04] >gb|OFU44622.1| transcriptional regulator [Clostridium sp. HMSC19A11] ...

helix-turn-helix transcriptional regulator [Clostridioides difficile] >gb|EQG60028.1| helix-turn-helix family protein [Clostridioides difficile DA00149] >gb|EQK84140.1| helix-turn-helix family protein [Clostridioides difficile CD127] >gb|OFU13329.1| transcriptional regulator [Clostridium sp. HMSC19D02] >gb|OFU41357.1| transcriptional regulator [Clostridium sp. HMSC19B04] >gb|OFU44622.1| transcriptional regulator [Clostridium sp. HMSC19A11]

66 aa protein

accession:WP_004454608.1

Alignment Sequence Identical proteins

Query: unknown ...

unknown [Vibrio cholerae]

92 aa protein

accession:AAL59720.1

Sequence Identical proteins

helix-turn-helix transcriptional regulator riptional regulator [Streptomyces sp. NRRL_B-16638] >gb|MDX3399457.1| helix-turn-helix transcriptional regulator [Streptomyces sp. ME01-18h] >gb|WTR93690.1| helix-turn-helix domain-containing protein [Streptomyces anthocyanicus] ...

helix-turn-helix transcriptional regulator [Streptomyces] >gb|MDX2923486.1| helix-turn-helix transcriptional regulator [Streptomyces sp. NRRL_B-16638] >gb|MDX3399457.1| helix-turn-helix transcriptional regulator [Streptomyces sp. ME01-18h] >gb|WTR93690.1| helix-turn-helix domain-containing protein [Streptomyces anthocyanicus]

473 aa protein

accession:WP_234328640.1

Alignment Sequence Identical proteins

helix-turn-helix domain-containing protein -containing protein [Synechocystis salina LEGE 06099] >gb|MBE9239690.1| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 00041] >gb|MBE9254055.1| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 00031] ...

helix-turn-helix domain-containing protein [Synechocystis salina] >gb|MBE9204324.1| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 06099] >gb|MBE9239690.1| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 00041] >gb|MBE9254055.1| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 00031]

85 aa protein

accession:WP_194017189.1

Alignment Sequence Identical proteins

285 aa protein

accession:WP_161270158.1

Alignment Sequence Identical proteins

152 aa protein

accession:WP_000175313.1

Alignment Sequence Identical proteins

66 aa protein

accession:WP_004454608.1

Alignment Sequence Identical proteins

unknown [Vibrio cholerae]

92 aa protein

accession:AAL59720.1

Sequence Identical proteins

473 aa protein

accession:WP_234328640.1

Alignment Sequence Identical proteins

85 aa protein

accession:WP_194017189.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|WP_004454608.1\|	helix-turn-helix transcriptional regulator [Clostridioides difficile] >gb\|EQG60028.1\| helix-turn-helix family protein [Clostridioides difficile DA00149] >gb\|EQK84140.1\| helix-turn-helix family protein [Clostridioides difficile CD127] >gb\|OFU13329.1\| transcriptional regulator [Clostridium sp. HMSC19D02] >gb\|OFU41357.1\| transcriptional regulator [Clostridium sp. HMSC19B04] >gb\|OFU44622.1\| transcriptional regulator [Clostridium sp. HMSC19A11]	34.7	34.7	30%	0.017	50.00%	WP_004454608.1
2 Select seq ref\|WP_000175313.1\|	helix-turn-helix transcriptional regulator [Enterobacteriaceae] >ref\|NP_313279.2\| transcription regulator [Escherichia coli O157:H7 str. Sakai] >gb\|EET3529763.1\| helix-turn-helix transcriptional regulator [Escherichia coli O157:NM] >gb\|EFW4743650.1\| helix-turn-helix transcriptional regulator [Shigella sonnei] >gb\|EFW8299214.1\| helix-turn-helix transcriptional regulator [Shigella flexneri] >gb\|EHU69870.1\| C.AhdI domain protein [Escherichia coli DEC3E] >gb\|EHU99929.1\| C.AhdI domain protein [Escherichia coli DEC4C] >gb\|EJY0122297.1\| helix-turn-helix transcriptional regulator [Escherichia coli O116] >gb\|EJY0203694.1\| helix-turn-helix transcriptional regulator [Escherichia coli O113] >gb\|EKG3689950.1\| helix-turn-helix transcriptional regulator [Escherichia coli O2] >gb\|EKW6616551.1\| helix-turn-helix transcriptional regulator [Pluralibacter gergoviae] >gb\|ELY6327504.1\| helix-turn-helix transcriptional regulator [Cronobacter malonaticus] >gb\|EMF0744379.1\| helix-turn-helix transcriptional regulator [Klebsiella aerogenes] >tpg\|HAT4519504.1\| helix-turn-helix transcriptional regulator [Serratia marcescens] >tpg\|HDG9829977.1\| helix-turn-helix transcriptional regulator [Raoultella ornithinolytica] >tpg\|HDV6336000.1\| helix-turn-helix transcriptional regulator [Klebsiella michiganensis]	34.3	34.3	68%	0.071	28.57%	WP_000175313.1
3 Select seq ref\|WP_234328640.1\|	helix-turn-helix transcriptional regulator [Streptomyces] >gb\|MDX2923486.1\| helix-turn-helix transcriptional regulator [Streptomyces sp. NRRL_B-16638] >gb\|MDX3399457.1\| helix-turn-helix transcriptional regulator [Streptomyces sp. ME01-18h] >gb\|WTR93690.1\| helix-turn-helix domain-containing protein [Streptomyces anthocyanicus]	34.3	34.3	43%	0.087	47.50%	WP_234328640.1
4 Select seq ref\|WP_194017189.1\|	helix-turn-helix domain-containing protein [Synechocystis salina] >gb\|MBE9204324.1\| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 06099] >gb\|MBE9239690.1\| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 00041] >gb\|MBE9254055.1\| helix-turn-helix domain-containing protein [Synechocystis salina LEGE 00031]	32.7	32.7	45%	0.11	28.57%	WP_194017189.1
5 Select seq ref\|WP_161270158.1\|	helix-turn-helix transcriptional regulator [Streptomyces coelicolor] >gb\|NSL81730.1\| helix-turn-helix domain-containing protein [Streptomyces coelicolor] >gb\|QKN68018.1\| helix-turn-helix domain-containing protein [Streptomyces coelicolor] >gb\|TYP05933.1\| helix-turn-helix protein [Streptomyces coelicolor] >gb\|TYP07196.1\| helix-turn-helix protein [Streptomyces coelicolor A3(2)] >gb\|TYP28659.1\| helix-turn-helix protein [Streptomyces coelicolor]	32.3	32.3	35%	0.39	45.45%	WP_161270158.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments