Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
DAA11879.1
TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
...
Query length:
1770 aa
DOMAINS: and other(s) domains
...
LOW QUALITY PROTEIN: uncharacterized protein LOC100794549
...
LOW QUALITY PROTEIN: uncharacterized protein LOC100794549 [Glycine max]
1585 aa protein
accession:XP_025983027.2
cysteine-rich RECEPTOR-like kinase h RECEPTOR-like kinase [Arabidopsis thaliana] >gb|ANM66829.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana] >gb|ANM66830.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana]
...
cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana] >ref|NP_001328701.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana] >gb|ANM66829.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana] >gb|ANM66830.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana]
1043 aa protein
accession:NP_001328700.1
Query: TPA: gag-pol fusion protein
...
TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:DAA11879.1
gag-pol fusion protein : Full=Transposon Ty2-LR1 Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >tpg|DAA09711.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
...
gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp|P0C2J3.1| RecName: Full=Transposon Ty2-LR1 Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >tpg|DAA09711.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:NP_058174.3
gag-pol fusion protein : Full=Transposon Ty2-C Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA42365.2| TY2B_C-TY2B protein [Saccharomyces cerevisiae] >tpg|DAA07463.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
...
gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp|P25384.2| RecName: Full=Transposon Ty2-C Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA42365.2| TY2B_C-TY2B protein [Saccharomyces cerevisiae] >tpg|DAA07463.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:NP_009909.2
gag-pol fusion protein : Full=Transposon Ty2-OR1 Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA99402.1| TY2B [Saccharomyces cerevisiae] >emb|CAA99404.1| TY2B [Saccharomyces cerevisiae] >tpg|DAA10966.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
...
gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp|Q12113.1| RecName: Full=Transposon Ty2-OR1 Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA99402.1| TY2B [Saccharomyces cerevisiae] >emb|CAA99404.1| TY2B [Saccharomyces cerevisiae] >tpg|DAA10966.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:NP_058185.3
DOMAINS: and other(s) domains
...
LOW QUALITY PROTEIN: uncharacterized protein LOC100794549 [Glycine max]
1585 aa protein
accession:XP_025983027.2
cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana] >ref|NP_001328701.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana] >gb|ANM66829.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana] >gb|ANM66830.1| cysteine-rich RECEPTOR-like kinase [Arabidopsis thaliana]
1043 aa protein
accession:NP_001328700.1
TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:DAA11879.1
gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp|P0C2J3.1| RecName: Full=Transposon Ty2-LR1 Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >tpg|DAA09711.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:NP_058174.3
gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp|P25384.2| RecName: Full=Transposon Ty2-C Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA42365.2| TY2B_C-TY2B protein [Saccharomyces cerevisiae] >tpg|DAA07463.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:NP_009909.2
gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp|Q12113.1| RecName: Full=Transposon Ty2-OR1 Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA99402.1| TY2B [Saccharomyces cerevisiae] >emb|CAA99404.1| TY2B [Saccharomyces cerevisiae] >tpg|DAA10966.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]
1770 aa protein
accession:NP_058185.3
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 3635 | 3635 | 100% | 0.0 | 98.98% | NP_058174.3 | |
2 | 118 | 118 | 30% | 4e-25 | 22.78% | XP_025983027.2 | |
3 | 96.3 | 96.3 | 26% | 2e-18 | 26.08% | NP_001328700.1 | |
4 | 3633 | 3633 | 100% | 0.0 | 98.81% | NP_009909.2 | |
5 | 3632 | 3632 | 100% | 0.0 | 98.64% | NP_058185.3 |