Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001177192.1
nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_001177194.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_006324.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_775269.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >sp|Q13901.1| RecName: Full=Nuclear nucleic acid-binding protein C1D; Short=hC1D [Homo sapiens] >gb|ABZ92396.1| nuclear DNA-binding protein, partial [synthetic construct] >emb|SJX26023.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH05235.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09584.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09589.1| C1D nuclear receptor co-repressor [Homo sapiens]
...
Query length:
141 aa
DOMAINS: and other(s) domains
...
Cut3-interacting putative exosome subunit Cti1 rotein C1739.07 [Schizosaccharomyces pombe 972h-] >emb|CAA20781.1| exosome C1D family subunit Cti1 [Schizosaccharomyces pombe]
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Cut3-interacting putative exosome subunit Cti1 [Schizosaccharomyces pombe] >sp|O74469.1| RecName: Full=Exosome complex protein C1739.07 [Schizosaccharomyces pombe 972h-] >emb|CAA20781.1| exosome C1D family subunit Cti1 [Schizosaccharomyces pombe]
133 aa protein
accession:NP_588415.1
Query: nuclear nucleic acid-binding protein C1D
...
nuclear nucleic acid-binding protein C1D [Mus musculus]
141 aa protein
accession:NP_065583.2
Query: nuclear nucleic acid-binding protein C1D id-binding protein C1D [Homo sapiens] >ref|NP_006324.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_775269.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >sp|Q13901.1| RecName: Full=Nuclear nucleic acid-binding protein C1D; Short=hC1D [Homo sapiens] >gb|ABZ92396.1| nuclear DNA-binding protein, partial [synthetic construct] >emb|SJX26023.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH05235.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09584.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09589.1| C1D nuclear receptor co-repressor [Homo sapiens]
...
nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_001177194.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_006324.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_775269.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >sp|Q13901.1| RecName: Full=Nuclear nucleic acid-binding protein C1D; Short=hC1D [Homo sapiens] >gb|ABZ92396.1| nuclear DNA-binding protein, partial [synthetic construct] >emb|SJX26023.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH05235.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09584.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09589.1| C1D nuclear receptor co-repressor [Homo sapiens]
141 aa protein
accession:NP_001177192.1
nuclear nucleic acid-binding protein C1D leic acid-binding protein C1D [Danio rerio] >gb|AAH83407.1| C1D nuclear receptor co-repressor [Danio rerio]
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nuclear nucleic acid-binding protein C1D [Danio rerio] >sp|Q5XJ97.1| RecName: Full=Nuclear nucleic acid-binding protein C1D [Danio rerio] >gb|AAH83407.1| C1D nuclear receptor co-repressor [Danio rerio]
148 aa protein
accession:NP_001007060.1
Sas10/Utp3/C1D family pothetical protein ISN45_At05g023680 [Arabidopsis thaliana x Arabidopsis arenosa] >gb|KAG7610332.1| hypothetical protein ISN44_As05g023510 [Arabidopsis suecica] >gb|AAK55673.1| AT5g25080/T11H3_90 [Arabidopsis thaliana] >gb|AAK91482.1| AT5g25080/T11H3_90 [Arabidopsis thaliana] >gb|AAM64957.1| unknown [Arabidopsis thaliana]
...
Sas10/Utp3/C1D family [Arabidopsis thaliana] >gb|KAG7603401.1| hypothetical protein ISN45_At05g023680 [Arabidopsis thaliana x Arabidopsis arenosa] >gb|KAG7610332.1| hypothetical protein ISN44_As05g023510 [Arabidopsis suecica] >gb|AAK55673.1| AT5g25080/T11H3_90 [Arabidopsis thaliana] >gb|AAK91482.1| AT5g25080/T11H3_90 [Arabidopsis thaliana] >gb|AAM64957.1| unknown [Arabidopsis thaliana]
217 aa protein
accession:NP_197890.1
nuclear nucleic acid-binding protein C1D id-binding protein C1D [Glycine soja] >gb|KAG5018561.1| hypothetical protein JHK87_014416 [Glycine soja] >gb|KAG5045125.1| hypothetical protein JHK86_014531 [Glycine max] >gb|KAG5147624.1| hypothetical protein JHK82_014505 [Glycine max] >gb|KAH1124404.1| hypothetical protein GYH30_014230 [Glycine max] >gb|KAH1244694.1| Nuclear nucleic acid-binding protein C1D [Glycine max]
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nuclear nucleic acid-binding protein C1D [Glycine max] >ref|XP_028235162.1| nuclear nucleic acid-binding protein C1D [Glycine soja] >gb|KAG5018561.1| hypothetical protein JHK87_014416 [Glycine soja] >gb|KAG5045125.1| hypothetical protein JHK86_014531 [Glycine max] >gb|KAG5147624.1| hypothetical protein JHK82_014505 [Glycine max] >gb|KAH1124404.1| hypothetical protein GYH30_014230 [Glycine max] >gb|KAH1244694.1| Nuclear nucleic acid-binding protein C1D [Glycine max]
211 aa protein
accession:XP_003526147.1
DOMAINS: and other(s) domains
...
Cut3-interacting putative exosome subunit Cti1 [Schizosaccharomyces pombe] >sp|O74469.1| RecName: Full=Exosome complex protein C1739.07 [Schizosaccharomyces pombe 972h-] >emb|CAA20781.1| exosome C1D family subunit Cti1 [Schizosaccharomyces pombe]
133 aa protein
accession:NP_588415.1
nuclear nucleic acid-binding protein C1D [Mus musculus]
141 aa protein
accession:NP_065583.2
nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_001177194.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_006324.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >ref|NP_775269.1| nuclear nucleic acid-binding protein C1D [Homo sapiens] >sp|Q13901.1| RecName: Full=Nuclear nucleic acid-binding protein C1D; Short=hC1D [Homo sapiens] >gb|ABZ92396.1| nuclear DNA-binding protein, partial [synthetic construct] >emb|SJX26023.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH05235.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09584.1| C1D nuclear receptor co-repressor [Homo sapiens] >gb|AAH09589.1| C1D nuclear receptor co-repressor [Homo sapiens]
141 aa protein
accession:NP_001177192.1
nuclear nucleic acid-binding protein C1D [Danio rerio] >sp|Q5XJ97.1| RecName: Full=Nuclear nucleic acid-binding protein C1D [Danio rerio] >gb|AAH83407.1| C1D nuclear receptor co-repressor [Danio rerio]
148 aa protein
accession:NP_001007060.1
Sas10/Utp3/C1D family [Arabidopsis thaliana] >gb|KAG7603401.1| hypothetical protein ISN45_At05g023680 [Arabidopsis thaliana x Arabidopsis arenosa] >gb|KAG7610332.1| hypothetical protein ISN44_As05g023510 [Arabidopsis suecica] >gb|AAK55673.1| AT5g25080/T11H3_90 [Arabidopsis thaliana] >gb|AAK91482.1| AT5g25080/T11H3_90 [Arabidopsis thaliana] >gb|AAM64957.1| unknown [Arabidopsis thaliana]
217 aa protein
accession:NP_197890.1
nuclear nucleic acid-binding protein C1D [Glycine max] >ref|XP_028235162.1| nuclear nucleic acid-binding protein C1D [Glycine soja] >gb|KAG5018561.1| hypothetical protein JHK87_014416 [Glycine soja] >gb|KAG5045125.1| hypothetical protein JHK86_014531 [Glycine max] >gb|KAG5147624.1| hypothetical protein JHK82_014505 [Glycine max] >gb|KAH1124404.1| hypothetical protein GYH30_014230 [Glycine max] >gb|KAH1244694.1| Nuclear nucleic acid-binding protein C1D [Glycine max]
211 aa protein
accession:XP_003526147.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 266 | 266 | 99% | 4e-92 | 90.71% | NP_065583.2 | |
| 2 | 179 | 179 | 87% | 1e-57 | 65.04% | NP_001007060.1 | |
| 3 | 60.8 | 60.8 | 64% | 7e-11 | 32.29% | NP_197890.1 | |
| 4 | 56.2 | 56.2 | 63% | 4e-09 | 28.42% | XP_003526147.1 | |
| 5 | 47.4 | 47.4 | 59% | 3e-06 | 30.68% | NP_588415.1 |