Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001186232.1
CCR4-NOT transcription complex subunit 2 isoform a [Homo sapiens]
...
Query length:
540 aa
DOMAINS: and other(s) domains
...
probable NOT transcription complex subunit VIP2 isoform X2 ubunit VIP2 isoform X2 [Glycine soja] >ref|XP_028190074.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine soja] >ref|XP_040862670.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >ref|XP_040862671.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >gb|KAG4386882.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG4386887.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG4386889.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG5145667.1| hypothetical protein JHK84_031210 [Glycine max] >gb|RZB79952.1| putative NOT transcription complex subunit VIP2 isoform C [Glycine soja]
...
probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >ref|XP_028190073.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine soja] >ref|XP_028190074.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine soja] >ref|XP_040862670.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >ref|XP_040862671.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >gb|KAG4386882.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG4386887.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG4386889.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG5145667.1| hypothetical protein JHK84_031210 [Glycine max] >gb|RZB79952.1| putative NOT transcription complex subunit VIP2 isoform C [Glycine soja]
647 aa protein
accession:XP_003538029.1
NOT2/NOT3/NOT5 C-terminal domain-containing protein containing protein [Caenorhabditis elegans]
...
NOT2/NOT3/NOT5 C-terminal domain-containing protein [Caenorhabditis elegans] >emb|CCD61664.1| NOT2/NOT3/NOT5 C-terminal domain-containing protein [Caenorhabditis elegans]
444 aa protein
accession:NP_494772.1
regena, isoform C | regena, isoform B [Drosophila melanogaster] >gb|AAN13250.1| regena, isoform B [Drosophila melanogaster] >gb|AHN57182.1| regena, isoform C [Drosophila melanogaster]
...
regena, isoform C [Drosophila melanogaster] >ref|NP_524239.2| regena, isoform B [Drosophila melanogaster] >gb|AAN13250.1| regena, isoform B [Drosophila melanogaster] >gb|AHN57182.1| regena, isoform C [Drosophila melanogaster]
579 aa protein
accession:NP_001287183.1
CCR4-NOT transcription complex subunit 2 isoform X1
...
CCR4-NOT transcription complex subunit 2 isoform X1 [Danio rerio]
530 aa protein
accession:XP_005163166.1
Query: CCR4-NOT transcription complex subunit 2 isoform a
...
CCR4-NOT transcription complex subunit 2 isoform a [Homo sapiens]
540 aa protein
accession:NP_001186232.1
CCR4-NOT transcription complex subunit 2 isoform a ex subunit 2 isoform 2 [Rattus norvegicus] >ref|XP_006514238.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mus musculus] >ref|XP_008828259.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Nannospalax galili] >ref|XP_029417897.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Nannospalax galili] >ref|XP_030101156.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mus musculus] >ref|XP_031205694.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mastomys coucha] >ref|XP_032768542.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Rattus rattus] >ref|XP_038934645.1| CCR4-NOT transcription complex subunit 2 isoform X1 [Rattus norvegicus] >sp|Q8C5L3.2| RecName: Full=CCR4-NOT transcription complex subunit 2; AltName: Full=CCR4-associated factor 2 [Mus musculus] >gb|AAH65171.1| CCR4-NOT transcription complex, subunit 2 [Mus musculus] >dbj|BAE29072.1| unnamed protein product [Mus musculus]
...
CCR4-NOT transcription complex subunit 2 isoform a [Mus musculus] >ref|NP_001386483.1| CCR4-NOT transcription complex subunit 2 isoform 2 [Rattus norvegicus] >ref|XP_006514238.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mus musculus] >ref|XP_008828259.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Nannospalax galili] >ref|XP_029417897.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Nannospalax galili] >ref|XP_030101156.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mus musculus] >ref|XP_031205694.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mastomys coucha] >ref|XP_032768542.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Rattus rattus] >ref|XP_038934645.1| CCR4-NOT transcription complex subunit 2 isoform X1 [Rattus norvegicus] >sp|Q8C5L3.2| RecName: Full=CCR4-NOT transcription complex subunit 2; AltName: Full=CCR4-associated factor 2 [Mus musculus] >gb|AAH65171.1| CCR4-NOT transcription complex, subunit 2 [Mus musculus] >dbj|BAE29072.1| unnamed protein product [Mus musculus]
540 aa protein
accession:NP_001032935.2
DOMAINS: and other(s) domains
...
probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >ref|XP_028190073.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine soja] >ref|XP_028190074.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine soja] >ref|XP_040862670.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >ref|XP_040862671.1| probable NOT transcription complex subunit VIP2 isoform X2 [Glycine max] >gb|KAG4386882.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG4386887.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG4386889.1| hypothetical protein GLYMA_11G145854v4 [Glycine max] >gb|KAG5145667.1| hypothetical protein JHK84_031210 [Glycine max] >gb|RZB79952.1| putative NOT transcription complex subunit VIP2 isoform C [Glycine soja]
647 aa protein
accession:XP_003538029.1
NOT2/NOT3/NOT5 C-terminal domain-containing protein [Caenorhabditis elegans] >emb|CCD61664.1| NOT2/NOT3/NOT5 C-terminal domain-containing protein [Caenorhabditis elegans]
444 aa protein
accession:NP_494772.1
regena, isoform C [Drosophila melanogaster] >ref|NP_524239.2| regena, isoform B [Drosophila melanogaster] >gb|AAN13250.1| regena, isoform B [Drosophila melanogaster] >gb|AHN57182.1| regena, isoform C [Drosophila melanogaster]
579 aa protein
accession:NP_001287183.1
CCR4-NOT transcription complex subunit 2 isoform X1 [Danio rerio]
530 aa protein
accession:XP_005163166.1
CCR4-NOT transcription complex subunit 2 isoform a [Homo sapiens]
540 aa protein
accession:NP_001186232.1
CCR4-NOT transcription complex subunit 2 isoform a [Mus musculus] >ref|NP_001386483.1| CCR4-NOT transcription complex subunit 2 isoform 2 [Rattus norvegicus] >ref|XP_006514238.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mus musculus] >ref|XP_008828259.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Nannospalax galili] >ref|XP_029417897.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Nannospalax galili] >ref|XP_030101156.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mus musculus] >ref|XP_031205694.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Mastomys coucha] >ref|XP_032768542.1| CCR4-NOT transcription complex subunit 2 isoform X2 [Rattus rattus] >ref|XP_038934645.1| CCR4-NOT transcription complex subunit 2 isoform X1 [Rattus norvegicus] >sp|Q8C5L3.2| RecName: Full=CCR4-NOT transcription complex subunit 2; AltName: Full=CCR4-associated factor 2 [Mus musculus] >gb|AAH65171.1| CCR4-NOT transcription complex, subunit 2 [Mus musculus] >dbj|BAE29072.1| unnamed protein product [Mus musculus]
540 aa protein
accession:NP_001032935.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 1118 | 1118 | 100% | 0.0 | 99.81% | NP_001032935.2 | |
2 | 939 | 939 | 97% | 0.0 | 87.48% | XP_005163166.1 | |
3 | 259 | 316 | 51% | 4e-78 | 54.81% | NP_001287183.1 | |
4 | 211 | 211 | 58% | 3e-61 | 40.41% | NP_494772.1 | |
5 | 166 | 211 | 54% | 3e-43 | 48.33% | XP_003538029.1 |