Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_001186294.1
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C precursor [Danio rerio] >ref|XP_009290611.1| semaphorin-6C isoform X1 [Danio rerio] >ref|XP_021322370.1| semaphorin-6C isoform X1 [Danio rerio] >dbj|BAJ34941.1| semaphorin 6E [Danio rerio]
...
Query length:
1064 aa
DOMAINS: and other(s) domains
...
semaphorin-6D isoform 4 precursor isoform 4 precursor [Homo sapiens] >sp|Q8NFY4.1| RecName: Full=Semaphorin-6D; Flags: Precursor [Homo sapiens] >gb|AAM69452.1| semaphorin 6D isoform 4 [Homo sapiens] >gb|KAI4057659.1| semaphorin 6D [Homo sapiens] >gb|KAI4057661.1| semaphorin 6D [Homo sapiens]
...
semaphorin-6D isoform 4 precursor [Homo sapiens] >ref|NP_705871.1| semaphorin-6D isoform 4 precursor [Homo sapiens] >sp|Q8NFY4.1| RecName: Full=Semaphorin-6D; Flags: Precursor [Homo sapiens] >gb|AAM69452.1| semaphorin 6D isoform 4 [Homo sapiens] >gb|KAI4057659.1| semaphorin 6D [Homo sapiens] >gb|KAI4057661.1| semaphorin 6D [Homo sapiens]
1073 aa protein
accession:NP_001345280.1
semaphorin-6D isoform 3 precursor 6D isoform X4 [Mus musculus] >ref|XP_030105211.1| semaphorin-6D isoform X4 [Mus musculus] >ref|XP_036016191.1| semaphorin-6D isoform X4 [Mus musculus]
...
semaphorin-6D isoform 3 precursor [Mus musculus] >ref|XP_030105207.1| semaphorin-6D isoform X4 [Mus musculus] >ref|XP_030105211.1| semaphorin-6D isoform X4 [Mus musculus] >ref|XP_036016191.1| semaphorin-6D isoform X4 [Mus musculus]
1069 aa protein
accession:NP_001277929.1
semaphorin-6C
...
semaphorin-6C [Danio rerio]
898 aa protein
accession:NP_998164.3
semaphorin-6C isoform X3
...
semaphorin-6C isoform X3 [Danio rerio]
1018 aa protein
accession:XP_009290613.1
Query: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C precursor rin-6C isoform X1 [Danio rerio] >dbj|BAJ34941.1| semaphorin 6E [Danio rerio]
...
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C precursor [Danio rerio] >ref|XP_009290611.1| semaphorin-6C isoform X1 [Danio rerio] >ref|XP_021322370.1| semaphorin-6C isoform X1 [Danio rerio] >dbj|BAJ34941.1| semaphorin 6E [Danio rerio]
1064 aa protein
accession:NP_001186294.1
semaphorin-6C isoform X2
...
semaphorin-6C isoform X2 [Danio rerio]
1039 aa protein
accession:XP_009290612.1
DOMAINS: and other(s) domains
...
semaphorin-6D isoform 4 precursor [Homo sapiens] >ref|NP_705871.1| semaphorin-6D isoform 4 precursor [Homo sapiens] >sp|Q8NFY4.1| RecName: Full=Semaphorin-6D; Flags: Precursor [Homo sapiens] >gb|AAM69452.1| semaphorin 6D isoform 4 [Homo sapiens] >gb|KAI4057659.1| semaphorin 6D [Homo sapiens] >gb|KAI4057661.1| semaphorin 6D [Homo sapiens]
1073 aa protein
accession:NP_001345280.1
semaphorin-6D isoform 3 precursor [Mus musculus] >ref|XP_030105207.1| semaphorin-6D isoform X4 [Mus musculus] >ref|XP_030105211.1| semaphorin-6D isoform X4 [Mus musculus] >ref|XP_036016191.1| semaphorin-6D isoform X4 [Mus musculus]
1069 aa protein
accession:NP_001277929.1
semaphorin-6C [Danio rerio]
898 aa protein
accession:NP_998164.3
semaphorin-6C isoform X3 [Danio rerio]
1018 aa protein
accession:XP_009290613.1
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C precursor [Danio rerio] >ref|XP_009290611.1| semaphorin-6C isoform X1 [Danio rerio] >ref|XP_021322370.1| semaphorin-6C isoform X1 [Danio rerio] >dbj|BAJ34941.1| semaphorin 6E [Danio rerio]
1064 aa protein
accession:NP_001186294.1
semaphorin-6C isoform X2 [Danio rerio]
1039 aa protein
accession:XP_009290612.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 2158 | 2158 | 100% | 0.0 | 97.65% | XP_009290612.1 | |
2 | 887 | 887 | 99% | 0.0 | 45.01% | NP_001345280.1 | |
3 | 871 | 871 | 99% | 0.0 | 44.95% | NP_001277929.1 | |
4 | 2108 | 2108 | 100% | 0.0 | 95.68% | XP_009290613.1 | |
5 | 946 | 1039 | 85% | 0.0 | 60.20% | NP_998164.3 |