Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_000081.1
collagen alpha-1(III) chain preproprotein [Homo sapiens]
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Query length:
1466 aa
DOMAINS: and other(s) domains
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Collagen alpha-1(IV) chain ll=Collagen alpha-1(IV) chain; Flags: Precursor [Caenorhabditis elegans] >emb|CAA81584.5| Collagen alpha-1(IV) chain [Caenorhabditis elegans]
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Collagen alpha-1(IV) chain [Caenorhabditis elegans] >sp|P17139.5| RecName: Full=Collagen alpha-1(IV) chain; Flags: Precursor [Caenorhabditis elegans] >emb|CAA81584.5| Collagen alpha-1(IV) chain [Caenorhabditis elegans]
1759 aa protein
accession:NP_001022662.2
collagen type IV alpha 1, isoform A alpha 1, isoform B [Drosophila melanogaster] >ref|NP_723046.1| collagen type IV alpha 1, isoform C [Drosophila melanogaster] >sp|P08120.3| RecName: Full=Collagen alpha-1(IV) chain; AltName: Full=Collagen type IV alpha 1; Flags: Precursor [Drosophila melanogaster] >gb|AAF52204.1| collagen type IV alpha 1, isoform A [Drosophila melanogaster] >gb|AAN10519.1| collagen type IV alpha 1, isoform B [Drosophila melanogaster] >gb|AAN10520.1| collagen type IV alpha 1, isoform C [Drosophila melanogaster]
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collagen type IV alpha 1, isoform A [Drosophila melanogaster] >ref|NP_723045.1| collagen type IV alpha 1, isoform B [Drosophila melanogaster] >ref|NP_723046.1| collagen type IV alpha 1, isoform C [Drosophila melanogaster] >sp|P08120.3| RecName: Full=Collagen alpha-1(IV) chain; AltName: Full=Collagen type IV alpha 1; Flags: Precursor [Drosophila melanogaster] >gb|AAF52204.1| collagen type IV alpha 1, isoform A [Drosophila melanogaster] >gb|AAN10519.1| collagen type IV alpha 1, isoform B [Drosophila melanogaster] >gb|AAN10520.1| collagen type IV alpha 1, isoform C [Drosophila melanogaster]
1779 aa protein
accession:NP_723044.1
collagen alpha-1(II) chain isoform 1 preproprotein chain; AltName: Full=Alpha-1 type II collagen; Contains: RecName: Full=Collagen alpha-1(II) chain; Contains: RecName: Full=Chondrocalcin; Flags: Precursor [Mus musculus] >gb|AAH82331.1| Col2a1 protein [Mus musculus]
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collagen alpha-1(II) chain isoform 1 preproprotein [Mus musculus] >sp|P28481.2| RecName: Full=Collagen alpha-1(II) chain; AltName: Full=Alpha-1 type II collagen; Contains: RecName: Full=Collagen alpha-1(II) chain; Contains: RecName: Full=Chondrocalcin; Flags: Precursor [Mus musculus] >gb|AAH82331.1| Col2a1 protein [Mus musculus]
1487 aa protein
accession:NP_112440.2
collagen, type II, alpha 1b precursor lpha-1b [Danio rerio] >emb|CCP28031.1| collagen type II, alpha-1b [Danio rerio] >emb|CCP28036.1| collagen type II, alpha-1b [Danio rerio]
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collagen, type II, alpha 1b precursor [Danio rerio] >emb|CCP27941.1| collagen type II, alpha-1b [Danio rerio] >emb|CCP28031.1| collagen type II, alpha-1b [Danio rerio] >emb|CCP28036.1| collagen type II, alpha-1b [Danio rerio]
1493 aa protein
accession:NP_001268407.1
Query: collagen alpha-1(III) chain preproprotein
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collagen alpha-1(III) chain preproprotein [Homo sapiens]
1466 aa protein
accession:NP_000081.1
collagen alpha-1(III) chain preproprotein ha-1(III) chain; Flags: Precursor [Homo sapiens] >gb|AAY24164.1| unknown [Homo sapiens] >gb|ACZ58371.1| collagen, type III, alpha 1 [Homo sapiens]
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collagen alpha-1(III) chain preproprotein [Homo sapiens] >sp|P02461.4| RecName: Full=Collagen alpha-1(III) chain; Flags: Precursor [Homo sapiens] >gb|AAY24164.1| unknown [Homo sapiens] >gb|ACZ58371.1| collagen, type III, alpha 1 [Homo sapiens]
1466 aa protein
accession:NP_000081.2
DOMAINS: and other(s) domains
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Collagen alpha-1(IV) chain [Caenorhabditis elegans] >sp|P17139.5| RecName: Full=Collagen alpha-1(IV) chain; Flags: Precursor [Caenorhabditis elegans] >emb|CAA81584.5| Collagen alpha-1(IV) chain [Caenorhabditis elegans]
1759 aa protein
accession:NP_001022662.2
collagen type IV alpha 1, isoform A [Drosophila melanogaster] >ref|NP_723045.1| collagen type IV alpha 1, isoform B [Drosophila melanogaster] >ref|NP_723046.1| collagen type IV alpha 1, isoform C [Drosophila melanogaster] >sp|P08120.3| RecName: Full=Collagen alpha-1(IV) chain; AltName: Full=Collagen type IV alpha 1; Flags: Precursor [Drosophila melanogaster] >gb|AAF52204.1| collagen type IV alpha 1, isoform A [Drosophila melanogaster] >gb|AAN10519.1| collagen type IV alpha 1, isoform B [Drosophila melanogaster] >gb|AAN10520.1| collagen type IV alpha 1, isoform C [Drosophila melanogaster]
1779 aa protein
accession:NP_723044.1
collagen alpha-1(II) chain isoform 1 preproprotein [Mus musculus] >sp|P28481.2| RecName: Full=Collagen alpha-1(II) chain; AltName: Full=Alpha-1 type II collagen; Contains: RecName: Full=Collagen alpha-1(II) chain; Contains: RecName: Full=Chondrocalcin; Flags: Precursor [Mus musculus] >gb|AAH82331.1| Col2a1 protein [Mus musculus]
1487 aa protein
accession:NP_112440.2
collagen, type II, alpha 1b precursor [Danio rerio] >emb|CCP27941.1| collagen type II, alpha-1b [Danio rerio] >emb|CCP28031.1| collagen type II, alpha-1b [Danio rerio] >emb|CCP28036.1| collagen type II, alpha-1b [Danio rerio]
1493 aa protein
accession:NP_001268407.1
collagen alpha-1(III) chain preproprotein [Homo sapiens]
1466 aa protein
accession:NP_000081.1
collagen alpha-1(III) chain preproprotein [Homo sapiens] >sp|P02461.4| RecName: Full=Collagen alpha-1(III) chain; Flags: Precursor [Homo sapiens] >gb|AAY24164.1| unknown [Homo sapiens] >gb|ACZ58371.1| collagen, type III, alpha 1 [Homo sapiens]
1466 aa protein
accession:NP_000081.2
See full multiple alignment
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Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Alignments
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Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
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1 | 2628 | 2628 | 100% | 0.0 | 99.93% | NP_000081.2 | |
2 | 978 | 978 | 100% | 0.0 | 60.07% | NP_112440.2 | |
3 | 874 | 874 | 84% | 0.0 | 62.36% | NP_001268407.1 | |
4 | 415 | 1368 | 88% | 6e-119 | 38.39% | NP_723044.1 | |
5 | 381 | 1070 | 94% | 1e-107 | 38.74% | NP_001022662.2 |