Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: CAA55997.1 A-438 protein [Saccharomyces cerevisiae] ... Query length: 438 aa

gag-pol fusion protein : Full=Transposon Ty2-B Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA84922.1| TY2B [Saccharomyces cerevisiae] >emb|CAA84927.2| TY2B [Saccharomyces cerevisiae] >tpg|DAA07024.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C] ...

gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp|Q12491.1| RecName: Full=Transposon Ty2-B Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb|CAA84922.1| TY2B [Saccharomyces cerevisiae] >emb|CAA84927.2| TY2B [Saccharomyces cerevisiae] >tpg|DAA07024.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]

1770 aa protein

accession:NP_009450.1

Alignment Sequence Identical proteins

Query: A-438 protein ...

A-438 protein [Saccharomyces cerevisiae]

438 aa protein

accession:CAA55997.1

Sequence Identical proteins

gag protein .1| RecName: Full=Transposon Ty2-DR3 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >gb|QHB07721.1| hypothetical protein SCEN_D05010 [Saccharomyces cerevisiae] >emb|CAA92720.1| unknown [Saccharomyces cerevisiae] >emb|CAA98913.1| TY2A [Saccharomyces cerevisiae] >tpg|DAA12103.1| TPA: gag protein [Saccharomyces cerevisiae S288C] ...

gag protein [Saccharomyces cerevisiae S288C] >sp|Q99303.1| RecName: Full=Transposon Ty2-DR3 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >gb|QHB07721.1| hypothetical protein SCEN_D05010 [Saccharomyces cerevisiae] >emb|CAA92720.1| unknown [Saccharomyces cerevisiae] >emb|CAA98913.1| TY2A [Saccharomyces cerevisiae] >tpg|DAA12103.1| TPA: gag protein [Saccharomyces cerevisiae S288C]

438 aa protein

accession:NP_058147.3

Alignment Sequence Identical proteins

gag protein [Saccharomyces cerevisiae S288C] >ref|NP_058164.1| gag protein [Saccharomyces cerevisiae S288C] >sp|P0CX61.1| RecName: Full=Transposon Ty2-F Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >sp|P0CX62.1| RecName: Full=Transposon Ty2-GR2 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >emb|CAA97176.1| TY2A [Saccharomyces cerevisiae] >emb|CAA97185.1| TY2A [Saccharomyces cerevisiae] >dbj|BAA09236.1| transposon TY1-17 49.8KD hypothetical protein [Saccharomyces cerevisiae] >tpg|DAA08254.1| TPA: gag protein [Saccharomyces cerevisiae S288C] >tpg|DAA12438.1| TPA: gag protein [Saccharomyces cerevisiae S288C]

438 aa protein

accession:NP_058157.1

Alignment Sequence Identical proteins

gag protein .2| RecName: Full=Transposon Ty2-C Gag polyprotein; AltName: Full=Transposon Ty2 protein A; Short=TY2A; Short=TYA; AltName: Full=Ty1-17 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >gb|ADB23372.1| transposon Ty2 protein A [Saccharomyces cerevisiae] >emb|CAA26398.1| unnamed protein product [Saccharomyces cerevisiae] >emb|CAA42364.2| TY2A_C TY2A-TY2A protein [Saccharomyces cerevisiae] >tpg|DAA07464.1| TPA: gag protein [Saccharomyces cerevisiae S288C] ...

gag protein [Saccharomyces cerevisiae S288C] >sp|P25383.2| RecName: Full=Transposon Ty2-C Gag polyprotein; AltName: Full=Transposon Ty2 protein A; Short=TY2A; Short=TYA; AltName: Full=Ty1-17 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >gb|ADB23372.1| transposon Ty2 protein A [Saccharomyces cerevisiae] >emb|CAA26398.1| unnamed protein product [Saccharomyces cerevisiae] >emb|CAA42364.2| TY2A_C TY2A-TY2A protein [Saccharomyces cerevisiae] >tpg|DAA07464.1| TPA: gag protein [Saccharomyces cerevisiae S288C]

438 aa protein

accession:NP_009910.2

Alignment Sequence Identical proteins

gag protein .1| RecName: Full=Transposon Ty2-DR2 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >emb|CAA92350.1| unknown [Saccharomyces cerevisiae] >tpg|DAA12052.1| TPA: gag protein [Saccharomyces cerevisiae S288C] ...

gag protein [Saccharomyces cerevisiae S288C] >sp|Q03483.1| RecName: Full=Transposon Ty2-DR2 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >emb|CAA92350.1| unknown [Saccharomyces cerevisiae] >tpg|DAA12052.1| TPA: gag protein [Saccharomyces cerevisiae S288C]

438 aa protein

accession:NP_058143.1

Alignment Sequence Identical proteins

1770 aa protein

accession:NP_009450.1

Alignment Sequence Identical proteins

A-438 protein [Saccharomyces cerevisiae]

438 aa protein

accession:CAA55997.1

Sequence Identical proteins

438 aa protein

accession:NP_058147.3

Alignment Sequence Identical proteins

438 aa protein

accession:NP_058157.1

Alignment Sequence Identical proteins

438 aa protein

accession:NP_009910.2

Alignment Sequence Identical proteins

438 aa protein

accession:NP_058143.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	Ident	Accession
1 Select seq ref\|NP_058147.3\|	gag protein [Saccharomyces cerevisiae S288C] >sp\|Q99303.1\| RecName: Full=Transposon Ty2-DR3 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >gb\|QHB07721.1\| hypothetical protein SCEN_D05010 [Saccharomyces cerevisiae] >emb\|CAA92720.1\| unknown [Saccharomyces cerevisiae] >emb\|CAA98913.1\| TY2A [Saccharomyces cerevisiae] >tpg\|DAA12103.1\| TPA: gag protein [Saccharomyces cerevisiae S288C]	898	898	100%	98.86%	NP_058147.3
2 Select seq ref\|NP_009450.1\|	gag-pol fusion protein [Saccharomyces cerevisiae S288C] >sp\|Q12491.1\| RecName: Full=Transposon Ty2-B Gag-Pol polyprotein; AltName: Full=TY2A-TY2B; AltName: Full=Transposon Ty2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Ty2 protease; Short=PR; Contains: RecName: Full=Integrase; Short=IN; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH [Saccharomyces cerevisiae S288C] >emb\|CAA84922.1\| TY2B [Saccharomyces cerevisiae] >emb\|CAA84927.2\| TY2B [Saccharomyces cerevisiae] >tpg\|DAA07024.1\| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]	898	898	98%	100.00%	NP_009450.1
3 Select seq ref\|NP_058157.1\|	gag protein [Saccharomyces cerevisiae S288C] >ref\|NP_058164.1\| gag protein [Saccharomyces cerevisiae S288C] >sp\|P0CX61.1\| RecName: Full=Transposon Ty2-F Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >sp\|P0CX62.1\| RecName: Full=Transposon Ty2-GR2 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >emb\|CAA97176.1\| TY2A [Saccharomyces cerevisiae] >emb\|CAA97185.1\| TY2A [Saccharomyces cerevisiae] >dbj\|BAA09236.1\| transposon TY1-17 49.8KD hypothetical protein [Saccharomyces cerevisiae] >tpg\|DAA08254.1\| TPA: gag protein [Saccharomyces cerevisiae S288C] >tpg\|DAA12438.1\| TPA: gag protein [Saccharomyces cerevisiae S288C]	898	898	100%	98.86%	NP_058157.1
4 Select seq ref\|NP_009910.2\|	gag protein [Saccharomyces cerevisiae S288C] >sp\|P25383.2\| RecName: Full=Transposon Ty2-C Gag polyprotein; AltName: Full=Transposon Ty2 protein A; Short=TY2A; Short=TYA; AltName: Full=Ty1-17 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >gb\|ADB23372.1\| transposon Ty2 protein A [Saccharomyces cerevisiae] >emb\|CAA26398.1\| unnamed protein product [Saccharomyces cerevisiae] >emb\|CAA42364.2\| TY2A_C TY2A-TY2A protein [Saccharomyces cerevisiae] >tpg\|DAA07464.1\| TPA: gag protein [Saccharomyces cerevisiae S288C]	896	896	100%	98.63%	NP_009910.2
5 Select seq ref\|NP_058143.1\|	gag protein [Saccharomyces cerevisiae S288C] >sp\|Q03483.1\| RecName: Full=Transposon Ty2-DR2 Gag polyprotein; Short=TY2A; Short=TYA; Short=Transposon Ty2 protein A; Contains: RecName: Full=Capsid protein; Short=CA; Contains: RecName: Full=Gag-p4 [Saccharomyces cerevisiae S288C] >emb\|CAA92350.1\| unknown [Saccharomyces cerevisiae] >tpg\|DAA12052.1\| TPA: gag protein [Saccharomyces cerevisiae S288C]	895	895	100%	98.40%	NP_058143.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments