Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AHD70285.1
Sequence 2374 from patent US 8586006
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Query length:
410 aa
DOMAINS: and other(s) domains
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oxysterols receptor LXR-alpha isoform 3 or LXR-alpha isoform X2 [Pan troglodytes] >ref|XP_009458628.1| oxysterols receptor LXR-alpha isoform X2 [Pan troglodytes] >ref|XP_024304066.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282149.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282153.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282154.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282155.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282157.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223344.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223350.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223351.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223352.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223353.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223356.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223357.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >gb|AIC50491.1| NR1H3, partial [synthetic construct] >emb|SJX40928.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH41172.1| NR1H3 protein [Homo sapiens] >gb|EAW67942.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a [Homo sapiens] >gb|EAW67948.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a [Homo sapiens]
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oxysterols receptor LXR-alpha isoform 3 [Homo sapiens] >ref|XP_001168367.1| oxysterols receptor LXR-alpha isoform X2 [Pan troglodytes] >ref|XP_009458628.1| oxysterols receptor LXR-alpha isoform X2 [Pan troglodytes] >ref|XP_024304066.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282149.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282153.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282154.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282155.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282157.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223344.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223350.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223351.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223352.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223353.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223356.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223357.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >gb|AIC50491.1| NR1H3, partial [synthetic construct] >emb|SJX40928.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH41172.1| NR1H3 protein [Homo sapiens] >gb|EAW67942.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a [Homo sapiens] >gb|EAW67948.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a [Homo sapiens]
402 aa protein
accession:NP_001123574.1
ecdysone receptor, isoform C ceptor, isoform C [Drosophila melanogaster]
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ecdysone receptor, isoform C [Drosophila melanogaster] >gb|AAM68347.1| ecdysone receptor, isoform C [Drosophila melanogaster]
669 aa protein
accession:NP_724459.1
thyroid hormone receptor beta isoform 2 receptor [Mus musculus] >gb|AAH89035.1| Thyroid hormone receptor beta [Mus musculus] >gb|AAI19553.1| Thyroid hormone receptor beta [Mus musculus] >gb|AAI19554.1| Thyroid hormone receptor beta [Mus musculus] >gb|EDL20647.1| thyroid hormone receptor beta, isoform CRA_b [Mus musculus]
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thyroid hormone receptor beta isoform 2 [Mus musculus] >gb|AAA86957.1| beta 2 thyroid hormone receptor [Mus musculus] >gb|AAH89035.1| Thyroid hormone receptor beta [Mus musculus] >gb|AAI19553.1| Thyroid hormone receptor beta [Mus musculus] >gb|AAI19554.1| Thyroid hormone receptor beta [Mus musculus] >gb|EDL20647.1| thyroid hormone receptor beta, isoform CRA_b [Mus musculus]
475 aa protein
accession:NP_033406.1
Query: Sequence 2374 from patent US 8586006
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Sequence 2374 from patent US 8586006
410 aa protein
accession:AHD70285.1
thyroid hormone receptor alpha isoform X3 eptor alpha isoform X1 [Danio aesculapii]
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thyroid hormone receptor alpha isoform X3 [Danio rerio] >ref|XP_056325486.1| thyroid hormone receptor alpha isoform X1 [Danio aesculapii]
409 aa protein
accession:XP_001921013.4
thyroid hormone receptor alpha isoform X1 eptor alpha isoform X1 [Danio rerio]
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thyroid hormone receptor alpha isoform X1 [Danio rerio] >ref|XP_009304996.1| thyroid hormone receptor alpha isoform X1 [Danio rerio]
419 aa protein
accession:XP_009304995.1
DOMAINS: and other(s) domains
...
oxysterols receptor LXR-alpha isoform 3 [Homo sapiens] >ref|XP_001168367.1| oxysterols receptor LXR-alpha isoform X2 [Pan troglodytes] >ref|XP_009458628.1| oxysterols receptor LXR-alpha isoform X2 [Pan troglodytes] >ref|XP_024304066.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282149.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282153.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282154.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282155.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_047282157.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223344.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223350.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223351.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223352.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223353.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223356.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >ref|XP_054223357.1| oxysterols receptor LXR-alpha isoform X1 [Homo sapiens] >gb|AIC50491.1| NR1H3, partial [synthetic construct] >emb|SJX40928.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH41172.1| NR1H3 protein [Homo sapiens] >gb|EAW67942.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a [Homo sapiens] >gb|EAW67948.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a [Homo sapiens]
402 aa protein
accession:NP_001123574.1
ecdysone receptor, isoform C [Drosophila melanogaster] >gb|AAM68347.1| ecdysone receptor, isoform C [Drosophila melanogaster]
669 aa protein
accession:NP_724459.1
thyroid hormone receptor beta isoform 2 [Mus musculus] >gb|AAA86957.1| beta 2 thyroid hormone receptor [Mus musculus] >gb|AAH89035.1| Thyroid hormone receptor beta [Mus musculus] >gb|AAI19553.1| Thyroid hormone receptor beta [Mus musculus] >gb|AAI19554.1| Thyroid hormone receptor beta [Mus musculus] >gb|EDL20647.1| thyroid hormone receptor beta, isoform CRA_b [Mus musculus]
475 aa protein
accession:NP_033406.1
Sequence 2374 from patent US 8586006
410 aa protein
accession:AHD70285.1
thyroid hormone receptor alpha isoform X3 [Danio rerio] >ref|XP_056325486.1| thyroid hormone receptor alpha isoform X1 [Danio aesculapii]
409 aa protein
accession:XP_001921013.4
thyroid hormone receptor alpha isoform X1 [Danio rerio] >ref|XP_009304996.1| thyroid hormone receptor alpha isoform X1 [Danio rerio]
419 aa protein
accession:XP_009304995.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
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1 | 730 | 730 | 100% | 0.0 | 84.78% | XP_001921013.4 | |
2 | 638 | 638 | 89% | 0.0 | 83.65% | NP_033406.1 | |
3 | 201 | 201 | 90% | 4e-59 | 32.53% | NP_001123574.1 | |
4 | 178 | 178 | 91% | 2e-48 | 29.81% | NP_724459.1 | |
5 | 723 | 723 | 100% | 0.0 | 82.78% | XP_009304995.1 |