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Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query: NP_013379.1 cleavage polyadenylation factor subunit YSH1 [Saccharomyces cerevisiae S288C] >sp|Q06224.1| RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa homolog 1; AltName: Full=mRNA 3'-end-processing protein YSH1 [Saccharomyces cerevisiae S288C] >gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces cerevisiae] >gb|AHY78644.1| Ysh1p [Saccharomyces cerevisiae YJM993] >gb|AJV46777.1| Ysh1p [Saccharomyces cerevisiae YJM1129] >gb|AJV47229.1| Ysh1p [Saccharomyces cerevisiae YJM1133] >gb|AJV47680.1| Ysh1p [Saccharomyces cerevisiae YJM1190] >gb|AJV48134.1| Ysh1p [Saccharomyces cerevisiae YJM1199] >gb|AJV48590.1| Ysh1p [Saccharomyces cerevisiae YJM1202] >gb|AJV49043.1| Ysh1p [Saccharomyces cerevisiae YJM1208] >gb|AJV49950.1| Ysh1p [Saccharomyces cerevisiae YJM1244] >gb|AJV53057.1| Ysh1p [Saccharomyces cerevisiae YJM1311] >gb|AJV53950.1| Ysh1p [Saccharomyces cerevisiae YJM1332] >gb|AJV54406.1| Ysh1p [Saccharomyces cerevisiae YJM1336] >gb|AJV55294.1| Ysh1p [Saccharomyces cerevisiae YJM1341] >gb|AJV55744.1| Ysh1p [Saccharomyces cerevisiae YJM1342] >gb|AJV56646.1| Ysh1p [Saccharomyces cerevisiae YJM1356] >gb|AJV60685.1| Ysh1p [Saccharomyces cerevisiae YJM1400] >gb|AJV62044.1| Ysh1p [Saccharomyces cerevisiae YJM1415] >gb|AJV62498.1| Ysh1p [Saccharomyces cerevisiae YJM1417] >gb|AJV66017.1| Ysh1p [Saccharomyces cerevisiae YJM1447] >gb|AJV66455.1| Ysh1p [Saccharomyces cerevisiae YJM1450] >gb|AJV67356.1| Ysh1p [Saccharomyces cerevisiae YJM1463] >gb|AJV68259.1| Ysh1p [Saccharomyces cerevisiae YJM1478] >gb|AJV68711.1| Ysh1p [Saccharomyces cerevisiae YJM1479] >gb|AJV69161.1| Ysh1p [Saccharomyces cerevisiae YJM1526] >gb|AJV70064.1| Ysh1p [Saccharomyces cerevisiae YJM1549] >gb|AJV71838.1| Ysh1p [Saccharomyces cerevisiae YJM1615] >gb|AJV72292.1| Ysh1p [Saccharomyces cerevisiae YJM189] >gb|AJV73192.1| Ysh1p [Saccharomyces cerevisiae YJM195] >gb|AJV74453.1| Ysh1p [Saccharomyces cerevisiae YJM270] >gb|AJV75295.1| Ysh1p [Saccharomyces cerevisiae YJM320] >gb|AJV76198.1| Ysh1p [Saccharomyces cerevisiae YJM428] >gb|AJV79800.1| Ysh1p [Saccharomyces cerevisiae YJM555] >gb|AJV80678.1| Ysh1p [Saccharomyces cerevisiae YJM681] >gb|AJV82037.1| Ysh1p [Saccharomyces cerevisiae YJM689] >gb|AJV82942.1| Ysh1p [Saccharomyces cerevisiae YJM969] >gb|AJV83398.1| Ysh1p [Saccharomyces cerevisiae YJM972] >gb|AJV83848.1| Ysh1p [Saccharomyces cerevisiae YJM975] >gb|AJV84300.1| Ysh1p [Saccharomyces cerevisiae YJM978] >gb|AJV84755.1| Ysh1p [Saccharomyces cerevisiae YJM981] >gb|AJV85208.1| Ysh1p [Saccharomyces cerevisiae YJM984] >gb|AJV85661.1| Ysh1p [Saccharomyces cerevisiae YJM987] >gb|AJV86115.1| Ysh1p [Saccharomyces cerevisiae YJM990] >gb|AJV86569.1| Ysh1p [Saccharomyces cerevisiae YJM996] >gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae YJM789] >gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a] >gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291] >gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796] >gb|EWG84505.1| Ysh1p [Saccharomyces cerevisiae R008] >gb|EWG89664.1| Ysh1p [Saccharomyces cerevisiae P301] >gb|EWG94435.1| Ysh1p [Saccharomyces cerevisiae R103] >gb|WNV72979.1| YSH1 [Saccharomyces cerevisiae synthetic construct] >emb|CAE6509508.1| Ysh1p [Saccharomyces cerevisiae PE-2] ... Query length: 779 aa
beta-lactamase domain-containing protein d polyadenylation specificity factor subunit 3; Short=Cleavage and polyadenylation specificity factor 3 [Dictyostelium discoideum] >gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum AX4] ...
beta-lactamase domain-containing protein [Dictyostelium discoideum AX4] >sp|Q86A79.1| RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; Short=Cleavage and polyadenylation specificity factor 3 [Dictyostelium discoideum] >gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum AX4]
774 aa protein
accession:XP_643926.1
cleavage and polyadenylation specificity factor subunit 3 factor 3 [Danio rerio] ...
cleavage and polyadenylation specificity factor subunit 3 [Danio rerio] >gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
690 aa protein
accession:NP_001003836.1
cleavage and polyadenylation specificity factor subunit 3 isoform 1 or subunit 3 isoform X1 [Mus caroli] >ref|XP_028633592.1| cleavage and polyadenylation specificity factor subunit 3 [Grammomys surdaster] >ref|XP_031212792.1| cleavage and polyadenylation specificity factor subunit 3 [Mastomys coucha] >ref|XP_052042013.1| cleavage and polyadenylation specificity factor subunit 3 [Apodemus sylvaticus] >sp|Q9QXK7.2| RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit; Short=CPSF 73 kDa subunit; Short=mRNA 3'-end-processing endonuclease CPSF-73 [Mus musculus] >gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus] ...
cleavage and polyadenylation specificity factor subunit 3 isoform 1 [Mus musculus] >ref|XP_021034573.1| cleavage and polyadenylation specificity factor subunit 3 isoform X1 [Mus caroli] >ref|XP_028633592.1| cleavage and polyadenylation specificity factor subunit 3 [Grammomys surdaster] >ref|XP_031212792.1| cleavage and polyadenylation specificity factor subunit 3 [Mastomys coucha] >ref|XP_052042013.1| cleavage and polyadenylation specificity factor subunit 3 [Apodemus sylvaticus] >sp|Q9QXK7.2| RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit; Short=CPSF 73 kDa subunit; Short=mRNA 3'-end-processing endonuclease CPSF-73 [Mus musculus] >gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
684 aa protein
accession:NP_061283.2
cleavage and polyadenylation specificity factor subunit 3 isoform d ...
cleavage and polyadenylation specificity factor subunit 3 isoform d [Homo sapiens]
688 aa protein
accession:NP_001308765.1
Query: cleavage polyadenylation factor subunit YSH1 e YSH1; AltName: Full=Yeast 73 kDa homolog 1; AltName: Full=mRNA 3'-end-processing protein YSH1 [Saccharomyces cerevisiae S288C] >gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces cerevisiae] >gb|AHY78644.1| Ysh1p [Saccharomyces cerevisiae YJM993] >gb|AJV46777.1| Ysh1p [Saccharomyces cerevisiae YJM1129] >gb|AJV47229.1| Ysh1p [Saccharomyces cerevisiae YJM1133] >gb|AJV47680.1| Ysh1p [Saccharomyces cerevisiae YJM1190] >gb|AJV48134.1| Ysh1p [Saccharomyces cerevisiae YJM1199] >gb|AJV48590.1| Ysh1p [Saccharomyces cerevisiae YJM1202] >gb|AJV49043.1| Ysh1p [Saccharomyces cerevisiae YJM1208] >gb|AJV49950.1| Ysh1p [Saccharomyces cerevisiae YJM1244] >gb|AJV53057.1| Ysh1p [Saccharomyces cerevisiae YJM1311] >gb|AJV53950.1| Ysh1p [Saccharomyces cerevisiae YJM1332] >gb|AJV54406.1| Ysh1p [Saccharomyces cerevisiae YJM1336] >gb|AJV55294.1| Ysh1p [Saccharomyces cerevisiae YJM1341] >gb|AJV55744.1| Ysh1p [Saccharomyces cerevisiae YJM1342] >gb|AJV56646.1| Ysh1p [Saccharomyces cerevisiae YJM1356] >gb|AJV60685.1| Ysh1p [Saccharomyces cerevisiae YJM1400] >gb|AJV62044.1| Ysh1p [Saccharomyces cerevisiae YJM1415] >gb|AJV62498.1| Ysh1p [Saccharomyces cerevisiae YJM1417] >gb|AJV66017.1| Ysh1p [Saccharomyces cerevisiae YJM1447] >gb|AJV66455.1| Ysh1p [Saccharomyces cerevisiae YJM1450] >gb|AJV67356.1| Ysh1p [Saccharomyces cerevisiae YJM1463] >gb|AJV68259.1| Ysh1p [Saccharomyces cerevisiae YJM1478] >gb|AJV68711.1| Ysh1p [Saccharomyces cerevisiae YJM1479] >gb|AJV69161.1| Ysh1p [Saccharomyces cerevisiae YJM1526] >gb|AJV70064.1| Ysh1p [Saccharomyces cerevisiae YJM1549] >gb|AJV71838.1| Ysh1p [Saccharomyces cerevisiae YJM1615] >gb|AJV72292.1| Ysh1p [Saccharomyces cerevisiae YJM189] >gb|AJV73192.1| Ysh1p [Saccharomyces cerevisiae YJM195] >gb|AJV74453.1| Ysh1p [Saccharomyces cerevisiae YJM270] >gb|AJV75295.1| Ysh1p [Saccharomyces cerevisiae YJM320] >gb|AJV76198.1| Ysh1p [Saccharomyces cerevisiae YJM428] >gb|AJV79800.1| Ysh1p [Saccharomyces cerevisiae YJM555] >gb|AJV80678.1| Ysh1p [Saccharomyces cerevisiae YJM681] >gb|AJV82037.1| Ysh1p [Saccharomyces cerevisiae YJM689] >gb|AJV82942.1| Ysh1p [Saccharomyces cerevisiae YJM969] >gb|AJV83398.1| Ysh1p [Saccharomyces cerevisiae YJM972] >gb|AJV83848.1| Ysh1p [Saccharomyces cerevisiae YJM975] >gb|AJV84300.1| Ysh1p [Saccharomyces cerevisiae YJM978] >gb|AJV84755.1| Ysh1p [Saccharomyces cerevisiae YJM981] >gb|AJV85208.1| Ysh1p [Saccharomyces cerevisiae YJM984] >gb|AJV85661.1| Ysh1p [Saccharomyces cerevisiae YJM987] >gb|AJV86115.1| Ysh1p [Saccharomyces cerevisiae YJM990] >gb|AJV86569.1| Ysh1p [Saccharomyces cerevisiae YJM996] >gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae YJM789] >gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a] >gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291] >gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796] >gb|EWG84505.1| Ysh1p [Saccharomyces cerevisiae R008] >gb|EWG89664.1| Ysh1p [Saccharomyces cerevisiae P301] >gb|EWG94435.1| Ysh1p [Saccharomyces cerevisiae R103] >gb|WNV72979.1| YSH1 [Saccharomyces cerevisiae synthetic construct] >emb|CAE6509508.1| Ysh1p [Saccharomyces cerevisiae PE-2] ...
cleavage polyadenylation factor subunit YSH1 [Saccharomyces cerevisiae S288C] >sp|Q06224.1| RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa homolog 1; AltName: Full=mRNA 3'-end-processing protein YSH1 [Saccharomyces cerevisiae S288C] >gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces cerevisiae] >gb|AHY78644.1| Ysh1p [Saccharomyces cerevisiae YJM993] >gb|AJV46777.1| Ysh1p [Saccharomyces cerevisiae YJM1129] >gb|AJV47229.1| Ysh1p [Saccharomyces cerevisiae YJM1133] >gb|AJV47680.1| Ysh1p [Saccharomyces cerevisiae YJM1190] >gb|AJV48134.1| Ysh1p [Saccharomyces cerevisiae YJM1199] >gb|AJV48590.1| Ysh1p [Saccharomyces cerevisiae YJM1202] >gb|AJV49043.1| Ysh1p [Saccharomyces cerevisiae YJM1208] >gb|AJV49950.1| Ysh1p [Saccharomyces cerevisiae YJM1244] >gb|AJV53057.1| Ysh1p [Saccharomyces cerevisiae YJM1311] >gb|AJV53950.1| Ysh1p [Saccharomyces cerevisiae YJM1332] >gb|AJV54406.1| Ysh1p [Saccharomyces cerevisiae YJM1336] >gb|AJV55294.1| Ysh1p [Saccharomyces cerevisiae YJM1341] >gb|AJV55744.1| Ysh1p [Saccharomyces cerevisiae YJM1342] >gb|AJV56646.1| Ysh1p [Saccharomyces cerevisiae YJM1356] >gb|AJV60685.1| Ysh1p [Saccharomyces cerevisiae YJM1400] >gb|AJV62044.1| Ysh1p [Saccharomyces cerevisiae YJM1415] >gb|AJV62498.1| Ysh1p [Saccharomyces cerevisiae YJM1417] >gb|AJV66017.1| Ysh1p [Saccharomyces cerevisiae YJM1447] >gb|AJV66455.1| Ysh1p [Saccharomyces cerevisiae YJM1450] >gb|AJV67356.1| Ysh1p [Saccharomyces cerevisiae YJM1463] >gb|AJV68259.1| Ysh1p [Saccharomyces cerevisiae YJM1478] >gb|AJV68711.1| Ysh1p [Saccharomyces cerevisiae YJM1479] >gb|AJV69161.1| Ysh1p [Saccharomyces cerevisiae YJM1526] >gb|AJV70064.1| Ysh1p [Saccharomyces cerevisiae YJM1549] >gb|AJV71838.1| Ysh1p [Saccharomyces cerevisiae YJM1615] >gb|AJV72292.1| Ysh1p [Saccharomyces cerevisiae YJM189] >gb|AJV73192.1| Ysh1p [Saccharomyces cerevisiae YJM195] >gb|AJV74453.1| Ysh1p [Saccharomyces cerevisiae YJM270] >gb|AJV75295.1| Ysh1p [Saccharomyces cerevisiae YJM320] >gb|AJV76198.1| Ysh1p [Saccharomyces cerevisiae YJM428] >gb|AJV79800.1| Ysh1p [Saccharomyces cerevisiae YJM555] >gb|AJV80678.1| Ysh1p [Saccharomyces cerevisiae YJM681] >gb|AJV82037.1| Ysh1p [Saccharomyces cerevisiae YJM689] >gb|AJV82942.1| Ysh1p [Saccharomyces cerevisiae YJM969] >gb|AJV83398.1| Ysh1p [Saccharomyces cerevisiae YJM972] >gb|AJV83848.1| Ysh1p [Saccharomyces cerevisiae YJM975] >gb|AJV84300.1| Ysh1p [Saccharomyces cerevisiae YJM978] >gb|AJV84755.1| Ysh1p [Saccharomyces cerevisiae YJM981] >gb|AJV85208.1| Ysh1p [Saccharomyces cerevisiae YJM984] >gb|AJV85661.1| Ysh1p [Saccharomyces cerevisiae YJM987] >gb|AJV86115.1| Ysh1p [Saccharomyces cerevisiae YJM990] >gb|AJV86569.1| Ysh1p [Saccharomyces cerevisiae YJM996] >gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae YJM789] >gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a] >gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291] >gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796] >gb|EWG84505.1| Ysh1p [Saccharomyces cerevisiae R008] >gb|EWG89664.1| Ysh1p [Saccharomyces cerevisiae P301] >gb|EWG94435.1| Ysh1p [Saccharomyces cerevisiae R103] >gb|WNV72979.1| YSH1 [Saccharomyces cerevisiae synthetic construct] >emb|CAE6509508.1| Ysh1p [Saccharomyces cerevisiae PE-2]
779 aa protein
accession:NP_013379.1
cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1 ing protein ysh1 [Schizosaccharomyces pombe 972h-] >emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe] ...
cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe] >sp|O13794.2| RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA 3'-end-processing protein ysh1 [Schizosaccharomyces pombe 972h-] >emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe]
757 aa protein
accession:NP_594263.2

Descriptions

Best hits

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Best hits producing significant alignments
Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession
1
cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe] >sp|O13794.2| RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA 3'-end-processing protein ysh1 [Schizosaccharomyces pombe 972h-] >emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe]
724 724 98% 0.048.83% NP_594263.2
2
cleavage and polyadenylation specificity factor subunit 3 [Danio rerio] >gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
557 557 97% 0.040.00% NP_001003836.1
3
cleavage and polyadenylation specificity factor subunit 3 isoform 1 [Mus musculus] >ref|XP_021034573.1| cleavage and polyadenylation specificity factor subunit 3 isoform X1 [Mus caroli] >ref|XP_028633592.1| cleavage and polyadenylation specificity factor subunit 3 [Grammomys surdaster] >ref|XP_031212792.1| cleavage and polyadenylation specificity factor subunit 3 [Mastomys coucha] >ref|XP_052042013.1| cleavage and polyadenylation specificity factor subunit 3 [Apodemus sylvaticus] >sp|Q9QXK7.2| RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit; Short=CPSF 73 kDa subunit; Short=mRNA 3'-end-processing endonuclease CPSF-73 [Mus musculus] >gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
555 555 95% 0.040.54% NP_061283.2
4
cleavage and polyadenylation specificity factor subunit 3 isoform d [Homo sapiens]
554 554 96% 0.039.97% NP_001308765.1
5
beta-lactamase domain-containing protein [Dictyostelium discoideum AX4] >sp|Q86A79.1| RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; Short=Cleavage and polyadenylation specificity factor 3 [Dictyostelium discoideum] >gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum AX4]
546 546 85% 0.043.15% XP_643926.1