Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_014014.1
exoribonuclease II [Saccharomyces cerevisiae S288C] >sp|P39112.2| RecName: Full=Exoribonuclease II, mitochondrial; Short=RNase II; Short=Ribonuclease II; AltName: Full=Deletion of SUV3 suppressor 1; AltName: Full=Mitochondrial biogenesis protein MSU1; Flags: Precursor [Saccharomyces cerevisiae S288C] >gb|AJS89651.1| Dss1p [Saccharomyces cerevisiae YJM1389] >gb|AJT00980.1| Dss1p [Saccharomyces cerevisiae YJM1592] >gb|EIW08560.1| Dss1p [Saccharomyces cerevisiae CEN.PK113-7D] >gb|KAF1900393.1| exoribonuclease II, partial [Saccharomyces cerevisiae] >gb|KAF1903980.1| exoribonuclease II, partial [Saccharomyces cerevisiae]
...
Query length:
969 aa
DOMAINS: and other(s) domains
...
Query: exoribonuclease II Name: Full=Exoribonuclease II, mitochondrial; Short=RNase II; Short=Ribonuclease II; AltName: Full=Deletion of SUV3 suppressor 1; AltName: Full=Mitochondrial biogenesis protein MSU1; Flags: Precursor [Saccharomyces cerevisiae S288C] >gb|AJS89651.1| Dss1p [Saccharomyces cerevisiae YJM1389] >gb|AJT00980.1| Dss1p [Saccharomyces cerevisiae YJM1592] >gb|EIW08560.1| Dss1p [Saccharomyces cerevisiae CEN.PK113-7D] >gb|KAF1900393.1| exoribonuclease II, partial [Saccharomyces cerevisiae] >gb|KAF1903980.1| exoribonuclease II, partial [Saccharomyces cerevisiae]
...
exoribonuclease II [Saccharomyces cerevisiae S288C] >sp|P39112.2| RecName: Full=Exoribonuclease II, mitochondrial; Short=RNase II; Short=Ribonuclease II; AltName: Full=Deletion of SUV3 suppressor 1; AltName: Full=Mitochondrial biogenesis protein MSU1; Flags: Precursor [Saccharomyces cerevisiae S288C] >gb|AJS89651.1| Dss1p [Saccharomyces cerevisiae YJM1389] >gb|AJT00980.1| Dss1p [Saccharomyces cerevisiae YJM1592] >gb|EIW08560.1| Dss1p [Saccharomyces cerevisiae CEN.PK113-7D] >gb|KAF1900393.1| exoribonuclease II, partial [Saccharomyces cerevisiae] >gb|KAF1903980.1| exoribonuclease II, partial [Saccharomyces cerevisiae]
969 aa protein
accession:NP_014014.1
ribonuclease R family protein II family 3'-5' exoribonuclease [Synechocystis salina LEGE 00041] >gb|MBE9252667.1| VacB/RNase II family 3'-5' exoribonuclease [Synechocystis salina LEGE 00031]
...
ribonuclease R family protein [Synechocystis salina] >gb|MBE9239628.1| VacB/RNase II family 3'-5' exoribonuclease [Synechocystis salina LEGE 00041] >gb|MBE9252667.1| VacB/RNase II family 3'-5' exoribonuclease [Synechocystis salina LEGE 00031]
666 aa protein
accession:WP_194018737.1
ribonuclease II, chloroplastic/mitochondrial isoform X2 tochondrial isoform X2 [Glycine soja] >gb|KAG4921528.1| hypothetical protein JHK86_050341 [Glycine max] >gb|KAG4924647.1| hypothetical protein JHK87_050187 [Glycine soja] >gb|KAH1154655.1| hypothetical protein GYH30_050086 [Glycine max] >gb|KRG99548.1| hypothetical protein GLYMA_18G153300v4 [Glycine max] >gb|RZB52153.1| Ribonuclease II, chloroplastic/mitochondrial [Glycine soja]
...
ribonuclease II, chloroplastic/mitochondrial isoform X2 [Glycine max] >ref|XP_028213780.1| ribonuclease II, chloroplastic/mitochondrial isoform X2 [Glycine soja] >gb|KAG4921528.1| hypothetical protein JHK86_050341 [Glycine max] >gb|KAG4924647.1| hypothetical protein JHK87_050187 [Glycine soja] >gb|KAH1154655.1| hypothetical protein GYH30_050086 [Glycine max] >gb|KRG99548.1| hypothetical protein GLYMA_18G153300v4 [Glycine max] >gb|RZB52153.1| Ribonuclease II, chloroplastic/mitochondrial [Glycine soja]
783 aa protein
accession:XP_003551278.1
ribonuclease R 1.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >sp|O32231.1| RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CDU|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CDV|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CEC|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CED|C Chain C, RNase R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CEE|C Chain C, RNase R [Bacillus subtilis subsp. subtilis str. 168] >gb|WYT86304.1| ribonuclease R [Bacillus sp. FSL K6-0255] >emb|CJR54806.1| ribonuclease R [Streptococcus pneumoniae] >dbj|BAM55439.1| ribonuclease R [Bacillus subtilis BEST7613] >gb|ADV94171.1| ribonuclease R [Bacillus subtilis BSn5] >gb|AFQ59213.1| Ribonuclease R [Bacillus subtilis QB928]
...
ribonuclease R [Bacillales] >ref|NP_391241.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >sp|O32231.1| RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CDU|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CDV|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CEC|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CED|C Chain C, RNase R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CEE|C Chain C, RNase R [Bacillus subtilis subsp. subtilis str. 168] >gb|WYT86304.1| ribonuclease R [Bacillus sp. FSL K6-0255] >emb|CJR54806.1| ribonuclease R [Streptococcus pneumoniae] >dbj|BAM55439.1| ribonuclease R [Bacillus subtilis BEST7613] >gb|ADV94171.1| ribonuclease R [Bacillus subtilis BSn5] >gb|AFQ59213.1| Ribonuclease R [Bacillus subtilis QB928]
779 aa protein
accession:WP_003228386.1
ribonuclease R RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog [Thermotoga maritima MSB8] >gb|AAD35804.1| vacB protein [Thermotoga maritima MSB8] >gb|AGL49648.1| 3-to-5 exoribonuclease RNase R [Thermotoga maritima MSB8] >gb|AHD17523.1| ribonuclease R [Thermotoga maritima MSB8] >gb|AIY85760.1| ribonuclease R [Thermotoga sp. 2812B] >gb|AKE26640.1| ribonuclease R [Thermotoga maritima]
...
ribonuclease R [Thermotoga] >sp|Q9WZI1.1| RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog [Thermotoga maritima MSB8] >gb|AAD35804.1| vacB protein [Thermotoga maritima MSB8] >gb|AGL49648.1| 3-to-5 exoribonuclease RNase R [Thermotoga maritima MSB8] >gb|AHD17523.1| ribonuclease R [Thermotoga maritima MSB8] >gb|AIY85760.1| ribonuclease R [Thermotoga sp. 2812B] >gb|AKE26640.1| ribonuclease R [Thermotoga maritima]
710 aa protein
accession:WP_004081010.1
hypothetical protein DDB_G0288469 tein DDB_G0288469 [Dictyostelium discoideum AX4]
...
hypothetical protein DDB_G0288469 [Dictyostelium discoideum AX4] >gb|EAL63206.1| hypothetical protein DDB_G0288469 [Dictyostelium discoideum AX4]
960 aa protein
accession:XP_636708.1
DOMAINS: and other(s) domains
...
exoribonuclease II [Saccharomyces cerevisiae S288C] >sp|P39112.2| RecName: Full=Exoribonuclease II, mitochondrial; Short=RNase II; Short=Ribonuclease II; AltName: Full=Deletion of SUV3 suppressor 1; AltName: Full=Mitochondrial biogenesis protein MSU1; Flags: Precursor [Saccharomyces cerevisiae S288C] >gb|AJS89651.1| Dss1p [Saccharomyces cerevisiae YJM1389] >gb|AJT00980.1| Dss1p [Saccharomyces cerevisiae YJM1592] >gb|EIW08560.1| Dss1p [Saccharomyces cerevisiae CEN.PK113-7D] >gb|KAF1900393.1| exoribonuclease II, partial [Saccharomyces cerevisiae] >gb|KAF1903980.1| exoribonuclease II, partial [Saccharomyces cerevisiae]
969 aa protein
accession:NP_014014.1
ribonuclease R family protein [Synechocystis salina] >gb|MBE9239628.1| VacB/RNase II family 3'-5' exoribonuclease [Synechocystis salina LEGE 00041] >gb|MBE9252667.1| VacB/RNase II family 3'-5' exoribonuclease [Synechocystis salina LEGE 00031]
666 aa protein
accession:WP_194018737.1
ribonuclease II, chloroplastic/mitochondrial isoform X2 [Glycine max] >ref|XP_028213780.1| ribonuclease II, chloroplastic/mitochondrial isoform X2 [Glycine soja] >gb|KAG4921528.1| hypothetical protein JHK86_050341 [Glycine max] >gb|KAG4924647.1| hypothetical protein JHK87_050187 [Glycine soja] >gb|KAH1154655.1| hypothetical protein GYH30_050086 [Glycine max] >gb|KRG99548.1| hypothetical protein GLYMA_18G153300v4 [Glycine max] >gb|RZB52153.1| Ribonuclease II, chloroplastic/mitochondrial [Glycine soja]
783 aa protein
accession:XP_003551278.1
ribonuclease R [Bacillales] >ref|NP_391241.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >sp|O32231.1| RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CDU|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CDV|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CEC|C Chain C, Ribonuclease R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CED|C Chain C, RNase R [Bacillus subtilis subsp. subtilis str. 168] >pdb|8CEE|C Chain C, RNase R [Bacillus subtilis subsp. subtilis str. 168] >gb|WYT86304.1| ribonuclease R [Bacillus sp. FSL K6-0255] >emb|CJR54806.1| ribonuclease R [Streptococcus pneumoniae] >dbj|BAM55439.1| ribonuclease R [Bacillus subtilis BEST7613] >gb|ADV94171.1| ribonuclease R [Bacillus subtilis BSn5] >gb|AFQ59213.1| Ribonuclease R [Bacillus subtilis QB928]
779 aa protein
accession:WP_003228386.1
ribonuclease R [Thermotoga] >sp|Q9WZI1.1| RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog [Thermotoga maritima MSB8] >gb|AAD35804.1| vacB protein [Thermotoga maritima MSB8] >gb|AGL49648.1| 3-to-5 exoribonuclease RNase R [Thermotoga maritima MSB8] >gb|AHD17523.1| ribonuclease R [Thermotoga maritima MSB8] >gb|AIY85760.1| ribonuclease R [Thermotoga sp. 2812B] >gb|AKE26640.1| ribonuclease R [Thermotoga maritima]
710 aa protein
accession:WP_004081010.1
hypothetical protein DDB_G0288469 [Dictyostelium discoideum AX4] >gb|EAL63206.1| hypothetical protein DDB_G0288469 [Dictyostelium discoideum AX4]
960 aa protein
accession:XP_636708.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 145 | 145 | 39% | 2e-34 | 28.93% | WP_194018737.1 | |
| 2 | 106 | 106 | 42% | 6e-22 | 22.73% | XP_003551278.1 | |
| 3 | 100 | 100 | 44% | 3e-20 | 26.10% | WP_003228386.1 | |
| 4 | 94.0 | 94.0 | 40% | 3e-18 | 24.47% | WP_004081010.1 | |
| 5 | 91.3 | 91.3 | 38% | 3e-17 | 26.68% | XP_636708.1 |