Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
NP_039269.2
DNA ligase 3 isoform alpha precursor [Homo sapiens] >ref|XP_016880113.1| DNA ligase 3 isoform X4 [Homo sapiens] >ref|XP_054172030.1| DNA ligase 3 isoform X4 [Homo sapiens] >sp|P49916.2| RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 3; Flags: Precursor [Homo sapiens] >gb|AIC49134.1| LIG3, partial [synthetic construct] >emb|SJX26172.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH68005.1| Ligase III, DNA, ATP-dependent [Homo sapiens] >gb|ADP89974.1| DNA ligase 3 [Homo sapiens] >gb|ADP89976.1| DNA ligase 3 [Homo sapiens]
...
Query length:
1009 aa
DOMAINS: and other(s) domains
...
ATP-dependent DNA ligase Cdc17 NA ligase 1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1 [Schizosaccharomyces pombe 972h-] >emb|CAA28754.1| DNA ligase [Schizosaccharomyces pombe] >emb|CAB08176.2| ATP-dependent DNA replication ligase Cdc17 [Schizosaccharomyces pombe]
...
ATP-dependent DNA ligase Cdc17 [Schizosaccharomyces pombe] >sp|P12000.1| RecName: Full=DNA ligase 1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1 [Schizosaccharomyces pombe 972h-] >emb|CAA28754.1| DNA ligase [Schizosaccharomyces pombe] >emb|CAB08176.2| ATP-dependent DNA replication ligase Cdc17 [Schizosaccharomyces pombe]
768 aa protein
accession:NP_593318.2
ATP-dependent DNA ligase Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [ATP] [Sulfolobus acidocaldarius DSM 639] >gb|AAY80158.1| thermostable DNA ligase [Sulfolobus acidocaldarius DSM 639] >gb|AGE70736.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius N8] >gb|AGE73008.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius Ron12/I] >gb|ALU28930.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius] >gb|ALU31656.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius]
...
ATP-dependent DNA ligase [Sulfolobus acidocaldarius] >sp|Q4JAM1.1| RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [ATP] [Sulfolobus acidocaldarius DSM 639] >gb|AAY80158.1| thermostable DNA ligase [Sulfolobus acidocaldarius DSM 639] >gb|AGE70736.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius N8] >gb|AGE73008.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius Ron12/I] >gb|ALU28930.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius] >gb|ALU31656.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius]
598 aa protein
accession:WP_011277660.1
BRCT domain-containing protein NA ligase 3; AltName: Full=DNA ligase III; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 3 [Dictyostelium discoideum] >gb|EAL65543.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
...
BRCT domain-containing protein [Dictyostelium discoideum AX4] >sp|Q54QM4.1| RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 3 [Dictyostelium discoideum] >gb|EAL65543.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
1175 aa protein
accession:XP_638847.1
DNA ligase 3 1.3| DNA ligase 3 [Drosophila melanogaster] >gb|ADB11088.1| UT01767p [Drosophila melanogaster] >gb|AOQ05436.1| lig3-RA, partial [synthetic construct]
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DNA ligase 3 [Drosophila melanogaster] >gb|AAF54801.3| DNA ligase 3 [Drosophila melanogaster] >gb|ADB11088.1| UT01767p [Drosophila melanogaster] >gb|AOQ05436.1| lig3-RA, partial [synthetic construct]
806 aa protein
accession:NP_650187.2
Query: DNA ligase 3 isoform alpha precursor soform X4 [Homo sapiens] >ref|XP_054172030.1| DNA ligase 3 isoform X4 [Homo sapiens] >sp|P49916.2| RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 3; Flags: Precursor [Homo sapiens] >gb|AIC49134.1| LIG3, partial [synthetic construct] >emb|SJX26172.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH68005.1| Ligase III, DNA, ATP-dependent [Homo sapiens] >gb|ADP89974.1| DNA ligase 3 [Homo sapiens] >gb|ADP89976.1| DNA ligase 3 [Homo sapiens]
...
DNA ligase 3 isoform alpha precursor [Homo sapiens] >ref|XP_016880113.1| DNA ligase 3 isoform X4 [Homo sapiens] >ref|XP_054172030.1| DNA ligase 3 isoform X4 [Homo sapiens] >sp|P49916.2| RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 3; Flags: Precursor [Homo sapiens] >gb|AIC49134.1| LIG3, partial [synthetic construct] >emb|SJX26172.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH68005.1| Ligase III, DNA, ATP-dependent [Homo sapiens] >gb|ADP89974.1| DNA ligase 3 [Homo sapiens] >gb|ADP89976.1| DNA ligase 3 [Homo sapiens]
1009 aa protein
accession:NP_039269.2
DNA ligase 3
...
DNA ligase 3 [Danio rerio]
1011 aa protein
accession:NP_001025345.2
DOMAINS: and other(s) domains
...
ATP-dependent DNA ligase Cdc17 [Schizosaccharomyces pombe] >sp|P12000.1| RecName: Full=DNA ligase 1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1 [Schizosaccharomyces pombe 972h-] >emb|CAA28754.1| DNA ligase [Schizosaccharomyces pombe] >emb|CAB08176.2| ATP-dependent DNA replication ligase Cdc17 [Schizosaccharomyces pombe]
768 aa protein
accession:NP_593318.2
ATP-dependent DNA ligase [Sulfolobus acidocaldarius] >sp|Q4JAM1.1| RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [ATP] [Sulfolobus acidocaldarius DSM 639] >gb|AAY80158.1| thermostable DNA ligase [Sulfolobus acidocaldarius DSM 639] >gb|AGE70736.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius N8] >gb|AGE73008.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius Ron12/I] >gb|ALU28930.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius] >gb|ALU31656.1| ATP-dependent DNA ligase [Sulfolobus acidocaldarius]
598 aa protein
accession:WP_011277660.1
BRCT domain-containing protein [Dictyostelium discoideum AX4] >sp|Q54QM4.1| RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 3 [Dictyostelium discoideum] >gb|EAL65543.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
1175 aa protein
accession:XP_638847.1
DNA ligase 3 [Drosophila melanogaster] >gb|AAF54801.3| DNA ligase 3 [Drosophila melanogaster] >gb|ADB11088.1| UT01767p [Drosophila melanogaster] >gb|AOQ05436.1| lig3-RA, partial [synthetic construct]
806 aa protein
accession:NP_650187.2
DNA ligase 3 isoform alpha precursor [Homo sapiens] >ref|XP_016880113.1| DNA ligase 3 isoform X4 [Homo sapiens] >ref|XP_054172030.1| DNA ligase 3 isoform X4 [Homo sapiens] >sp|P49916.2| RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 3; Flags: Precursor [Homo sapiens] >gb|AIC49134.1| LIG3, partial [synthetic construct] >emb|SJX26172.1| unnamed protein product, partial [Human ORFeome Gateway entry vector] >gb|AAH68005.1| Ligase III, DNA, ATP-dependent [Homo sapiens] >gb|ADP89974.1| DNA ligase 3 [Homo sapiens] >gb|ADP89976.1| DNA ligase 3 [Homo sapiens]
1009 aa protein
accession:NP_039269.2
DNA ligase 3 [Danio rerio]
1011 aa protein
accession:NP_001025345.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 1319 | 1319 | 91% | 0.0 | 69.56% | NP_001025345.2 | |
2 | 597 | 597 | 62% | 0.0 | 48.14% | NP_650187.2 | |
3 | 455 | 455 | 57% | 6e-141 | 42.22% | XP_638847.1 | |
4 | 225 | 225 | 55% | 5e-62 | 31.16% | WP_011277660.1 | |
5 | 203 | 203 | 47% | 3e-53 | 30.47% | NP_593318.2 |