Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AZT82009.1
short wave sensitive opsin 1 [Glossophaga soricina]
...
Query length:
344 aa
DOMAINS: and other(s) domains
...
opsin-1, short-wave-sensitive 2 sin-1, short-wave-sensitive 2; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; AltName: Full=Opsin SWS-2 [Danio rerio] >gb|AAD24755.1| blue-sensitive opsin [Danio rerio] >gb|AAH59418.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|AAH62277.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|AAI53616.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|ALG92538.1| short-wavelength-sensitive-2 cone opsin [Danio rerio]
...
opsin-1, short-wave-sensitive 2 [Danio rerio] >sp|Q9W6A8.1| RecName: Full=Opsin-1, short-wave-sensitive 2; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; AltName: Full=Opsin SWS-2 [Danio rerio] >gb|AAD24755.1| blue-sensitive opsin [Danio rerio] >gb|AAH59418.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|AAH62277.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|AAI53616.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|ALG92538.1| short-wavelength-sensitive-2 cone opsin [Danio rerio]
354 aa protein
accession:NP_571267.1
green-sensitive opsin-3 Full=Green-sensitive opsin-3; AltName: Full=Green cone photoreceptor pigment 3; AltName: Full=Opsin RH2-3; AltName: Full=Opsin-1, medium-wave-sensitive 3 [Danio rerio] >gb|AAH75989.1| Opsin 1 (cone pigments), medium-wave-sensitive, 3 [Danio rerio] >gb|ALG92536.1| rhodopsin-like-2.3 cone opsin [Danio rerio] >dbj|BAC24131.1| green sensitive cone opsin [Danio rerio]
...
green-sensitive opsin-3 [Danio rerio] >sp|Q8AYM7.1| RecName: Full=Green-sensitive opsin-3; AltName: Full=Green cone photoreceptor pigment 3; AltName: Full=Opsin RH2-3; AltName: Full=Opsin-1, medium-wave-sensitive 3 [Danio rerio] >gb|AAH75989.1| Opsin 1 (cone pigments), medium-wave-sensitive, 3 [Danio rerio] >gb|ALG92536.1| rhodopsin-like-2.3 cone opsin [Danio rerio] >dbj|BAC24131.1| green sensitive cone opsin [Danio rerio]
349 aa protein
accession:NP_878312.1
green-sensitive opsin-4 sensitive opsin 2 [Danio rerio]
...
green-sensitive opsin-4 [Danio rerio] >gb|AAD24753.1| green-sensitive opsin 2 [Danio rerio]
349 aa protein
accession:NP_571329.1
short-wave-sensitive opsin 1 =Short-wave-sensitive opsin 1; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; Short=BOP [Homo sapiens]
...
short-wave-sensitive opsin 1 [Homo sapiens] >sp|P03999.2| RecName: Full=Short-wave-sensitive opsin 1; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; Short=BOP [Homo sapiens]
345 aa protein
accession:NP_001372054.1
Query: short wave sensitive opsin 1
...
short wave sensitive opsin 1 [Glossophaga soricina]
344 aa protein
accession:AZT82009.1
short-wave-sensitive opsin 1 =Short-wave-sensitive opsin 1; Short=S opsin; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; Short=BOP; AltName: Full=Short wavelength-sensitive cone opsin [Mus musculus] >gb|AAA92458.1| blue cone pigment [Mus musculus] >gb|AAB53320.1| blue cone pigment [Mus musculus] >gb|AAG17989.1| blue opsin [Mus musculus] >gb|AAG17990.1| blue opsin [Mus musculus] >gb|AAH26021.1| Opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) [Mus musculus]
...
short-wave-sensitive opsin 1 [Mus musculus] >sp|P51491.1| RecName: Full=Short-wave-sensitive opsin 1; Short=S opsin; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; Short=BOP; AltName: Full=Short wavelength-sensitive cone opsin [Mus musculus] >gb|AAA92458.1| blue cone pigment [Mus musculus] >gb|AAB53320.1| blue cone pigment [Mus musculus] >gb|AAG17989.1| blue opsin [Mus musculus] >gb|AAG17990.1| blue opsin [Mus musculus] >gb|AAH26021.1| Opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) [Mus musculus]
346 aa protein
accession:NP_031564.1
DOMAINS: and other(s) domains
...
opsin-1, short-wave-sensitive 2 [Danio rerio] >sp|Q9W6A8.1| RecName: Full=Opsin-1, short-wave-sensitive 2; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; AltName: Full=Opsin SWS-2 [Danio rerio] >gb|AAD24755.1| blue-sensitive opsin [Danio rerio] >gb|AAH59418.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|AAH62277.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|AAI53616.1| Opsin 1 (cone pigments), short-wave-sensitive 2 [Danio rerio] >gb|ALG92538.1| short-wavelength-sensitive-2 cone opsin [Danio rerio]
354 aa protein
accession:NP_571267.1
green-sensitive opsin-3 [Danio rerio] >sp|Q8AYM7.1| RecName: Full=Green-sensitive opsin-3; AltName: Full=Green cone photoreceptor pigment 3; AltName: Full=Opsin RH2-3; AltName: Full=Opsin-1, medium-wave-sensitive 3 [Danio rerio] >gb|AAH75989.1| Opsin 1 (cone pigments), medium-wave-sensitive, 3 [Danio rerio] >gb|ALG92536.1| rhodopsin-like-2.3 cone opsin [Danio rerio] >dbj|BAC24131.1| green sensitive cone opsin [Danio rerio]
349 aa protein
accession:NP_878312.1
green-sensitive opsin-4 [Danio rerio] >gb|AAD24753.1| green-sensitive opsin 2 [Danio rerio]
349 aa protein
accession:NP_571329.1
short-wave-sensitive opsin 1 [Homo sapiens] >sp|P03999.2| RecName: Full=Short-wave-sensitive opsin 1; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; Short=BOP [Homo sapiens]
345 aa protein
accession:NP_001372054.1
short wave sensitive opsin 1 [Glossophaga soricina]
344 aa protein
accession:AZT82009.1
short-wave-sensitive opsin 1 [Mus musculus] >sp|P51491.1| RecName: Full=Short-wave-sensitive opsin 1; Short=S opsin; AltName: Full=Blue cone photoreceptor pigment; AltName: Full=Blue-sensitive opsin; Short=BOP; AltName: Full=Short wavelength-sensitive cone opsin [Mus musculus] >gb|AAA92458.1| blue cone pigment [Mus musculus] >gb|AAB53320.1| blue cone pigment [Mus musculus] >gb|AAG17989.1| blue opsin [Mus musculus] >gb|AAG17990.1| blue opsin [Mus musculus] >gb|AAH26021.1| Opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) [Mus musculus]
346 aa protein
accession:NP_031564.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|---|
1 | 641 | 641 | 99% | 0.0 | 88.92% | NP_031564.1 | |
2 | 635 | 635 | 99% | 0.0 | 88.34% | NP_001372054.1 | |
3 | 318 | 318 | 93% | 3e-106 | 47.55% | NP_571267.1 | |
4 | 317 | 317 | 94% | 8e-106 | 46.18% | NP_878312.1 | |
5 | 315 | 315 | 94% | 3e-105 | 45.26% | NP_571329.1 |