Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
1TMF_4
Chain 4, THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) [Theiler's encephalomyelitis virus]
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Query length:
45 aa
DOMAINS: and other(s) domains
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Query: Chain 4, THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4)
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Chain 4, THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) [Theiler's encephalomyelitis virus]
45 aa protein
accession:1TMF_4
RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor
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RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN DA)]
2301 aa protein
accession:P13899.1
RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor
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RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN BEAN 8386)]
2303 aa protein
accession:P08544.1
polyprotein
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polyprotein [Theiler's encephalomyelitis virus]
2303 aa protein
accession:ABD67451.1
viral polyprotein
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viral polyprotein [Theilovirus]
2303 aa protein
accession:NP_040350.1
polyprotein
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polyprotein [Sikhote-Alin virus]
2303 aa protein
accession:AHW57724.1
DOMAINS: and other(s) domains
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Chain 4, THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) [Theiler's encephalomyelitis virus]
45 aa protein
accession:1TMF_4
RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN DA)]
2301 aa protein
accession:P13899.1
RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN BEAN 8386)]
2303 aa protein
accession:P08544.1
polyprotein [Theiler's encephalomyelitis virus]
2303 aa protein
accession:ABD67451.1
viral polyprotein [Theilovirus]
2303 aa protein
accession:NP_040350.1
polyprotein [Sikhote-Alin virus]
2303 aa protein
accession:AHW57724.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
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1 | 90.1 | 90.1 | 93% | 4e-19 | 97.62% | P08544.1 | |
2 | 89.7 | 89.7 | 93% | 5e-19 | 97.62% | ABD67451.1 | |
3 | 89.7 | 89.7 | 93% | 5e-19 | 97.62% | AHW57724.1 | |
4 | 88.2 | 88.2 | 93% | 2e-18 | 95.24% | P13899.1 | |
5 | 86.3 | 86.3 | 93% | 9e-18 | 92.86% | NP_040350.1 |