Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
3MBE_F
Chain F, MHC CLASS II H2-IAg7 BETA CHAIN [Mus musculus]
...
Query length:
201 aa
DOMAINS: and other(s) domains
...
rano class II histocompatibility antigen, D-1 beta chain isoform X1
...
rano class II histocompatibility antigen, D-1 beta chain isoform X1 [Rattus norvegicus]
281 aa protein
accession:XP_063135086.1
Query: Chain F, MHC CLASS II H2-IAg7 BETA CHAIN
...
Chain F, MHC CLASS II H2-IAg7 BETA CHAIN [Mus musculus]
201 aa protein
accession:3MBE_F
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor
...
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]
261 aa protein
accession:NP_001230891.1
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X3
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HLA class II histocompatibility antigen, DQ beta 2 chain isoform X3 [Homo sapiens]
219 aa protein
accession:XP_054184473.1
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X1
...
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X1 [Homo sapiens]
275 aa protein
accession:XP_054184471.1
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X2
...
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X2 [Homo sapiens]
256 aa protein
accession:XP_054184472.1
DOMAINS: and other(s) domains
...
rano class II histocompatibility antigen, D-1 beta chain isoform X1 [Rattus norvegicus]
281 aa protein
accession:XP_063135086.1
Chain F, MHC CLASS II H2-IAg7 BETA CHAIN [Mus musculus]
201 aa protein
accession:3MBE_F
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]
261 aa protein
accession:NP_001230891.1
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X3 [Homo sapiens]
219 aa protein
accession:XP_054184473.1
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X1 [Homo sapiens]
275 aa protein
accession:XP_054184471.1
HLA class II histocompatibility antigen, DQ beta 2 chain isoform X2 [Homo sapiens]
256 aa protein
accession:XP_054184472.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 288 | 288 | 93% | 2e-98 | 72.63% | NP_001230891.1 | |
| 2 | 260 | 260 | 93% | 3e-87 | 64.25% | XP_063135086.1 | |
| 3 | 277 | 277 | 92% | 1e-94 | 70.59% | XP_054184473.1 | |
| 4 | 279 | 279 | 93% | 1e-94 | 69.84% | XP_054184471.1 | |
| 5 | 278 | 278 | 93% | 1e-94 | 69.84% | XP_054184472.1 |