Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: 5C0X_G Chain G, Exosome complex component RRP40 [Saccharomyces cerevisiae S288C] ... Query length: 243 aa

exosome subunit Rrp40 ...

exosome subunit Rrp40 [Schizosaccharomyces pombe]

240 aa protein

accession:NP_593242.1

Alignment Sequence Identical proteins

ribosomal RNA processing 40, isoform B ...

ribosomal RNA processing 40, isoform B [Drosophila melanogaster]

232 aa protein

accession:NP_001285565.1

Alignment Sequence Identical proteins

exosome complex component RRP40 isoform 1 ...

exosome complex component RRP40 isoform 1 [Mus musculus]

274 aa protein

accession:NP_079789.1

Alignment Sequence Identical proteins

exosome complex component RRP40 ...

exosome complex component RRP40 [Rattus norvegicus]

282 aa protein

accession:NP_001101406.2

Alignment Sequence Identical proteins

Query: Chain G, Exosome complex component RRP40 ...

Chain G, Exosome complex component RRP40 [Saccharomyces cerevisiae S288C]

243 aa protein

accession:5C0X_G

Sequence Identical proteins

exosome non-catalytic core subunit RRP40 ...

exosome non-catalytic core subunit RRP40 [Saccharomyces cerevisiae S288C]

240 aa protein

accession:NP_014499.2

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_014499.2\|	exosome non-catalytic core subunit RRP40 [Saccharomyces cerevisiae S288C]	497	497	98%	4e-180	100.00%	NP_014499.2
2 Select seq ref\|NP_593242.1\|	exosome subunit Rrp40 [Schizosaccharomyces pombe]	157	157	91%	2e-46	37.72%	NP_593242.1
3 Select seq ref\|NP_001285565.1\|	ribosomal RNA processing 40, isoform B [Drosophila melanogaster]	126	126	86%	2e-34	35.05%	NP_001285565.1
4 Select seq ref\|NP_079789.1\|	exosome complex component RRP40 isoform 1 [Mus musculus]	125	125	71%	2e-33	38.29%	NP_079789.1
5 Select seq ref\|NP_001101406.2\|	exosome complex component RRP40 [Rattus norvegicus]	124	124	71%	4e-33	37.71%	NP_001101406.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments