Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
6GYM_6
Chain 6, General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1 [Saccharomyces cerevisiae S288C]
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Query length:
461 aa
DOMAINS: and other(s) domains
...
transcription factor TFIIH complex subunit Ssl1
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transcription factor TFIIH complex subunit Ssl1 [Schizosaccharomyces pombe]
421 aa protein
accession:NP_587800.1
general transcription factor II H2
...
general transcription factor II H2 [Arabidopsis thaliana]
421 aa protein
accession:NP_683275.2
general transcription factor IIH subunit 2
...
general transcription factor IIH subunit 2 [Glycine max]
419 aa protein
accession:XP_006590708.1
general transcription factor IIH subunit 2
...
general transcription factor IIH subunit 2 [Danio rerio]
392 aa protein
accession:NP_963875.1
Query: Chain 6, General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1
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Chain 6, General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1 [Saccharomyces cerevisiae S288C]
461 aa protein
accession:6GYM_6
TFIIH/NER complex subunit SSL1
...
TFIIH/NER complex subunit SSL1 [Saccharomyces cerevisiae S288C]
461 aa protein
accession:NP_013105.1
DOMAINS: and other(s) domains
...
transcription factor TFIIH complex subunit Ssl1 [Schizosaccharomyces pombe]
421 aa protein
accession:NP_587800.1
general transcription factor II H2 [Arabidopsis thaliana]
421 aa protein
accession:NP_683275.2
general transcription factor IIH subunit 2 [Glycine max]
419 aa protein
accession:XP_006590708.1
general transcription factor IIH subunit 2 [Danio rerio]
392 aa protein
accession:NP_963875.1
Chain 6, General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1 [Saccharomyces cerevisiae S288C]
461 aa protein
accession:6GYM_6
TFIIH/NER complex subunit SSL1 [Saccharomyces cerevisiae S288C]
461 aa protein
accession:NP_013105.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 828 | 828 | 100% | 0.0 | 90.46% | NP_013105.1 | |
| 2 | 353 | 353 | 88% | 4e-117 | 42.05% | NP_587800.1 | |
| 3 | 253 | 253 | 82% | 3e-78 | 36.62% | NP_683275.2 | |
| 4 | 247 | 247 | 82% | 5e-76 | 35.95% | XP_006590708.1 | |
| 5 | 241 | 241 | 82% | 4e-74 | 34.78% | NP_963875.1 |