Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
8TRR_F
Chain F, HLA class II histocompatibility antigen, DR alpha chain [Homo sapiens]
...
Query length:
181 aa
DOMAINS: and other(s) domains
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uncharacterized protein LOC368816 precursor
...
uncharacterized protein LOC368816 precursor [Danio rerio]
236 aa protein
accession:NP_001007430.1
histocompatibility 2, class II antigen A, alpha precursor
...
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DO alpha chain precursor
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HLA class II histocompatibility antigen, DO alpha chain precursor [Homo sapiens]
250 aa protein
accession:NP_002110.1
RT1 class II, locus Da precursor
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RT1 class II, locus Da precursor [Rattus norvegicus]
255 aa protein
accession:NP_001008847.1
Query: Chain F, HLA class II histocompatibility antigen, DR alpha chain
...
Chain F, HLA class II histocompatibility antigen, DR alpha chain [Homo sapiens]
181 aa protein
accession:8TRR_F
HLA class II histocompatibility antigen, DR alpha chain precursor
...
HLA class II histocompatibility antigen, DR alpha chain precursor [Homo sapiens]
254 aa protein
accession:NP_061984.2
DOMAINS: and other(s) domains
...
uncharacterized protein LOC368816 precursor [Danio rerio]
236 aa protein
accession:NP_001007430.1
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DO alpha chain precursor [Homo sapiens]
250 aa protein
accession:NP_002110.1
RT1 class II, locus Da precursor [Rattus norvegicus]
255 aa protein
accession:NP_001008847.1
Chain F, HLA class II histocompatibility antigen, DR alpha chain [Homo sapiens]
181 aa protein
accession:8TRR_F
HLA class II histocompatibility antigen, DR alpha chain precursor [Homo sapiens]
254 aa protein
accession:NP_061984.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 377 | 377 | 100% | 1e-133 | 100.00% | NP_061984.2 | |
| 2 | 317 | 317 | 100% | 9e-110 | 82.32% | NP_001008847.1 | |
| 3 | 218 | 218 | 98% | 7e-71 | 56.67% | NP_034508.2 | |
| 4 | 102 | 102 | 98% | 7e-26 | 33.15% | NP_001007430.1 | |
| 5 | 226 | 226 | 93% | 4e-74 | 60.00% | NP_002110.1 |