Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AAA37897.1
invariant chain protein [Mus musculus]
...
Query length:
25 aa
DOMAINS: and other(s) domains
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HLA class II histocompatibility antigen gamma chain isoform c
...
HLA class II histocompatibility antigen gamma chain isoform c [Homo sapiens]
160 aa protein
accession:NP_001020329.1
HLA class II histocompatibility antigen gamma chain isoform e
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HLA class II histocompatibility antigen gamma chain isoform e [Homo sapiens]
192 aa protein
accession:NP_001351013.1
HLA class II histocompatibility antigen gamma chain isoform d
...
HLA class II histocompatibility antigen gamma chain isoform d [Homo sapiens]
211 aa protein
accession:NP_001351012.1
Query: invariant chain protein
...
invariant chain protein [Mus musculus]
25 aa protein
accession:AAA37897.1
H-2 class II histocompatibility antigen gamma chain isoform 2
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H-2 class II histocompatibility antigen gamma chain isoform 2 [Mus musculus]
215 aa protein
accession:NP_034675.1
H-2 class II histocompatibility antigen gamma chain isoform 1
...
H-2 class II histocompatibility antigen gamma chain isoform 1 [Mus musculus]
279 aa protein
accession:NP_001036070.1
DOMAINS: and other(s) domains
...
HLA class II histocompatibility antigen gamma chain isoform c [Homo sapiens]
160 aa protein
accession:NP_001020329.1
HLA class II histocompatibility antigen gamma chain isoform e [Homo sapiens]
192 aa protein
accession:NP_001351013.1
HLA class II histocompatibility antigen gamma chain isoform d [Homo sapiens]
211 aa protein
accession:NP_001351012.1
invariant chain protein [Mus musculus]
25 aa protein
accession:AAA37897.1
H-2 class II histocompatibility antigen gamma chain isoform 2 [Mus musculus]
215 aa protein
accession:NP_034675.1
H-2 class II histocompatibility antigen gamma chain isoform 1 [Mus musculus]
279 aa protein
accession:NP_001036070.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 55.5 | 55.5 | 100% | 1e-10 | 100.00% | NP_034675.1 | |
| 2 | 43.9 | 43.9 | 100% | 1e-06 | 80.00% | NP_001020329.1 | |
| 3 | 55.1 | 55.1 | 100% | 2e-10 | 100.00% | NP_001036070.1 | |
| 4 | 43.9 | 43.9 | 100% | 2e-06 | 80.00% | NP_001351013.1 | |
| 5 | 43.5 | 43.5 | 100% | 3e-06 | 80.00% | NP_001351012.1 |