Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AAA39614.1
MHC H2-IA-alpha [Mus musculus]
...
Query length:
248 aa
DOMAINS: and other(s) domains
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class II histocompatibility antigen, M alpha chain precursor
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class II histocompatibility antigen, M alpha chain precursor [Mus musculus]
261 aa protein
accession:NP_001411717.1
H-2 class II histocompatibility antigen, A-U alpha chain
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H-2 class II histocompatibility antigen, A-U alpha chain [Danio rerio]
233 aa protein
accession:XP_068079146.1
rano class II histocompatibility antigen, D-1 beta chain isoform X1
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rano class II histocompatibility antigen, D-1 beta chain isoform X1 [Rattus norvegicus]
281 aa protein
accession:XP_063135086.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
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HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2
...
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
DOMAINS: and other(s) domains
...
class II histocompatibility antigen, M alpha chain precursor [Mus musculus]
261 aa protein
accession:NP_001411717.1
H-2 class II histocompatibility antigen, A-U alpha chain [Danio rerio]
233 aa protein
accession:XP_068079146.1
rano class II histocompatibility antigen, D-1 beta chain isoform X1 [Rattus norvegicus]
281 aa protein
accession:XP_063135086.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054186783.1
HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2 [Homo sapiens]
255 aa protein
accession:XP_054187296.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 379 | 379 | 100% | 1e-133 | 73.39% | XP_054186783.1 | |
| 2 | 114 | 114 | 78% | 3e-30 | 30.43% | XP_068079146.1 | |
| 3 | 107 | 107 | 77% | 3e-27 | 31.82% | NP_001411717.1 | |
| 4 | 71.2 | 71.2 | 40% | 1e-13 | 33.66% | XP_063135086.1 | |
| 5 | 376 | 376 | 100% | 1e-132 | 72.98% | XP_054187296.1 |