Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AAM89163.1 RNA polymerase subunit [Synechococcus sp. WH 8007] ... Query length: 189 aa

DNA-directed RNA polymerase subunit beta' ...

DNA-directed RNA polymerase subunit beta' [Enterobacteriaceae]

1407 aa protein

accession:WP_000653944.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta' ...

DNA-directed RNA polymerase subunit beta' [Clostridia]

1161 aa protein

accession:WP_003429485.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit beta' ...

DNA-directed RNA polymerase subunit beta' [Bacillus]

1199 aa protein

accession:WP_004399688.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase subunit gamma ...

DNA-directed RNA polymerase subunit gamma [Microcystis]

626 aa protein

accession:WP_004163413.1

Alignment Sequence Identical proteins

Query: RNA polymerase subunit ...

RNA polymerase subunit [Synechococcus sp. WH 8007]

189 aa protein

accession:AAM89163.1

Sequence Identical proteins

DNA-directed RNA polymerase subunit gamma ...

DNA-directed RNA polymerase subunit gamma [Synechocystis]

626 aa protein

accession:WP_190596344.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|WP_190596344.1\|	DNA-directed RNA polymerase subunit gamma [Synechocystis]	318	318	100%	2e-105	82.54%	WP_190596344.1
2 Select seq ref\|WP_004163413.1\|	DNA-directed RNA polymerase subunit gamma [Microcystis]	315	315	100%	3e-104	81.48%	WP_004163413.1
3 Select seq ref\|WP_003429485.1\|	DNA-directed RNA polymerase subunit beta' [Clostridia]	226	226	100%	3e-67	57.89%	WP_003429485.1
4 Select seq ref\|WP_004399688.1\|	DNA-directed RNA polymerase subunit beta' [Bacillus]	219	219	100%	5e-65	56.08%	WP_004399688.1
5 Select seq ref\|WP_000653944.1\|	DNA-directed RNA polymerase subunit beta' [Enterobacteriaceae]	207	207	100%	1e-60	50.53%	WP_000653944.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments