Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AAR87772.1
MHC class II antigen alpha chain [Rattus norvegicus]
...
Query length:
255 aa
DOMAINS: and other(s) domains
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mamu class II histocompatibility antigen, DR alpha chain
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mamu class II histocompatibility antigen, DR alpha chain [Danio rerio]
236 aa protein
accession:XP_005167290.2
histocompatibility 2, class II antigen A, alpha precursor
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histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DP alpha 1 chain precursor
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HLA class II histocompatibility antigen, DP alpha 1 chain precursor [Homo sapiens]
260 aa protein
accession:NP_001229453.1
HLA class II histocompatibility antigen, DR alpha chain precursor
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HLA class II histocompatibility antigen, DR alpha chain precursor [Homo sapiens]
254 aa protein
accession:NP_061984.2
Query: MHC class II antigen alpha chain
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MHC class II antigen alpha chain [Rattus norvegicus]
255 aa protein
accession:AAR87772.1
RT1 class II, locus Da precursor
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RT1 class II, locus Da precursor [Rattus norvegicus]
255 aa protein
accession:NP_001008847.1
DOMAINS: and other(s) domains
...
mamu class II histocompatibility antigen, DR alpha chain [Danio rerio]
236 aa protein
accession:XP_005167290.2
histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]
256 aa protein
accession:NP_034508.2
HLA class II histocompatibility antigen, DP alpha 1 chain precursor [Homo sapiens]
260 aa protein
accession:NP_001229453.1
HLA class II histocompatibility antigen, DR alpha chain precursor [Homo sapiens]
254 aa protein
accession:NP_061984.2
MHC class II antigen alpha chain [Rattus norvegicus]
255 aa protein
accession:AAR87772.1
RT1 class II, locus Da precursor [Rattus norvegicus]
255 aa protein
accession:NP_001008847.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 524 | 524 | 100% | 0.0 | 99.61% | NP_001008847.1 | |
| 2 | 385 | 385 | 98% | 1e-135 | 77.29% | NP_061984.2 | |
| 3 | 258 | 258 | 85% | 1e-85 | 55.96% | NP_034508.2 | |
| 4 | 119 | 119 | 85% | 3e-31 | 32.58% | XP_005167290.2 | |
| 5 | 273 | 273 | 100% | 5e-91 | 56.86% | NP_001229453.1 |