Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AAT46026.1 short stature homeobox transcript variant SHOXa [Homo sapiens] ... Query length: 292 aa

Homeobox domain-containing protein ...

Homeobox domain-containing protein [Caenorhabditis elegans]

274 aa protein

accession:NP_001305205.1

Alignment Sequence Identical proteins

dorsal root ganglia homeobox protein isoform X1 ...

dorsal root ganglia homeobox protein isoform X1 [Rattus norvegicus]

263 aa protein

accession:XP_063131133.1

Alignment Sequence Identical proteins

dorsal root ganglia homeobox, isoform F ...

dorsal root ganglia homeobox, isoform F [Drosophila melanogaster]

587 aa protein

accession:NP_001285592.1

Alignment Sequence Identical proteins

short stature homeobox protein 2 isoform X1 ...

short stature homeobox protein 2 isoform X1 [Danio rerio]

287 aa protein

accession:XP_021337040.1

Alignment Sequence Identical proteins

Query: short stature homeobox transcript variant SHOXa ...

short stature homeobox transcript variant SHOXa [Homo sapiens]

292 aa protein

accession:AAT46026.1

Sequence Identical proteins

short stature homeobox protein isoform SHOXa ...

short stature homeobox protein isoform SHOXa [Homo sapiens]

292 aa protein

accession:NP_000442.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_000442.1\|	short stature homeobox protein isoform SHOXa [Homo sapiens]	602	602	100%	0.0	99.66%	NP_000442.1
2 Select seq ref\|XP_021337040.1\|	short stature homeobox protein 2 isoform X1 [Danio rerio]	325	325	100%	3e-111	64.00%	XP_021337040.1
3 Select seq ref\|XP_063131133.1\|	dorsal root ganglia homeobox protein isoform X1 [Rattus norvegicus]	96.7	96.7	23%	1e-22	63.24%	XP_063131133.1
4 Select seq ref\|NP_001285592.1\|	dorsal root ganglia homeobox, isoform F [Drosophila melanogaster]	93.2	93.2	20%	3e-20	67.21%	NP_001285592.1
5 Select seq ref\|NP_001305205.1\|	Homeobox domain-containing protein [Caenorhabditis elegans]	85.9	85.9	22%	1e-18	59.70%	NP_001305205.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments