Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AEY79609.1 RPB1 [Hyaloscypha vitreola] ... Query length: 219 aa

Query: RPB1 ...

RPB1 [Hyaloscypha vitreola]

219 aa protein

accession:AEY79609.1

Sequence Identical proteins

DNA-directed RNA polymerase II complex large subunit Rpb1 ...

DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]

1752 aa protein

accession:NP_595673.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II core subunit RPO21 ...

DNA-directed RNA polymerase II core subunit RPO21 [Saccharomyces cerevisiae S288C]

1733 aa protein

accession:NP_010141.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB1 ...

DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]

1970 aa protein

accession:NP_000928.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB1 ...

DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]

1970 aa protein

accession:NP_001277997.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB1-like ...

DNA-directed RNA polymerase II subunit RPB1-like [Glycine max]

1790 aa protein

accession:XP_040861151.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_595673.1\|	DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]	218	218	100%	3e-64	52.27%	NP_595673.1
2 Select seq ref\|NP_010141.1\|	DNA-directed RNA polymerase II core subunit RPO21 [Saccharomyces cerevisiae S288C]	180	180	100%	9e-51	45.45%	NP_010141.1
3 Select seq ref\|NP_000928.1\|	DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]	169	169	100%	6e-47	40.44%	NP_000928.1
4 Select seq ref\|NP_001277997.1\|	DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]	169	169	100%	6e-47	40.44%	NP_001277997.1
5 Select seq ref\|XP_040861151.1\|	DNA-directed RNA polymerase II subunit RPB1-like [Glycine max]	167	167	100%	2e-46	38.84%	XP_040861151.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments