Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AFH02657.1
RNA polymerase II largest subunit 1 [Usnea sphacelata]
...
Query length:
194 aa
DOMAINS: and other(s) domains
...
Query: RNA polymerase II largest subunit 1
...
RNA polymerase II largest subunit 1 [Usnea sphacelata]
194 aa protein
accession:AFH02657.1
DNA-directed RNA polymerase II complex large subunit Rpb1
...
DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]
1752 aa protein
accession:NP_595673.1
DNA-directed RNA polymerase II core subunit RPO21
...
DNA-directed RNA polymerase II core subunit RPO21 [Saccharomyces cerevisiae S288C]
1733 aa protein
accession:NP_010141.1
DNA-directed RNA polymerase II subunit RPB1
...
DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
1965 aa protein
accession:XP_005156282.1
DNA-directed RNA polymerase II subunit RPB1
...
DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
1970 aa protein
accession:NP_001277997.1
DNA-directed RNA polymerase II subunit RPB1
...
DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
1970 aa protein
accession:NP_000928.1
DOMAINS: and other(s) domains
...
RNA polymerase II largest subunit 1 [Usnea sphacelata]
194 aa protein
accession:AFH02657.1
DNA-directed RNA polymerase II complex large subunit Rpb1 [Schizosaccharomyces pombe]
1752 aa protein
accession:NP_595673.1
DNA-directed RNA polymerase II core subunit RPO21 [Saccharomyces cerevisiae S288C]
1733 aa protein
accession:NP_010141.1
DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
1965 aa protein
accession:XP_005156282.1
DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
1970 aa protein
accession:NP_001277997.1
DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
1970 aa protein
accession:NP_000928.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 197 | 197 | 100% | 4e-57 | 54.64% | NP_595673.1 | |
| 2 | 171 | 171 | 98% | 3e-48 | 48.17% | NP_010141.1 | |
| 3 | 155 | 155 | 100% | 2e-42 | 41.50% | XP_005156282.1 | |
| 4 | 155 | 155 | 100% | 2e-42 | 42.36% | NP_001277997.1 | |
| 5 | 155 | 155 | 100% | 2e-42 | 42.36% | NP_000928.1 |