Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AFJ24178.1 recombination activating protein 1 [Austroablepharus kinghorni] ... Query length: 270 aa

DNA repair protein RAD16 ...

DNA repair protein RAD16 [Saccharomyces cerevisiae S288C]

790 aa protein

accession:NP_009672.1

Alignment Sequence Identical proteins

RING zinc finger-containing protein ...

RING zinc finger-containing protein [Dictyostelium discoideum AX4]

355 aa protein

accession:XP_647367.1

Alignment Sequence Identical proteins

E3 ubiquitin-protein ligase RNF170 isoform X1 ...

E3 ubiquitin-protein ligase RNF170 isoform X1 [Rattus norvegicus]

286 aa protein

accession:XP_063131693.1

Alignment Sequence Identical proteins

Query: recombination activating protein 1 ...

recombination activating protein 1 [Austroablepharus kinghorni]

270 aa protein

accession:AFJ24178.1

Sequence Identical proteins

V(D)J recombination-activating protein 1 isoform X1 ...

V(D)J recombination-activating protein 1 isoform X1 [Homo sapiens]

1043 aa protein

accession:XP_047283340.1

Alignment Sequence Identical proteins

V(D)J recombination-activating protein 1 isoform X1 ...

V(D)J recombination-activating protein 1 isoform X1 [Danio rerio]

1057 aa protein

accession:XP_009296061.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047283340.1\|	V(D)J recombination-activating protein 1 isoform X1 [Homo sapiens]	291	291	79%	9e-91	61.57%	XP_047283340.1
2 Select seq ref\|XP_009296061.1\|	V(D)J recombination-activating protein 1 isoform X1 [Danio rerio]	144	144	85%	4e-38	33.07%	XP_009296061.1
3 Select seq ref\|XP_063131693.1\|	E3 ubiquitin-protein ligase RNF170 isoform X1 [Rattus norvegicus]	42.4	42.4	33%	0.001	33.68%	XP_063131693.1
4 Select seq ref\|NP_009672.1\|	DNA repair protein RAD16 [Saccharomyces cerevisiae S288C]	40.8	40.8	13%	0.005	38.89%	NP_009672.1
5 Select seq ref\|XP_647367.1\|	RING zinc finger-containing protein [Dictyostelium discoideum AX4]	37.4	37.4	10%	0.065	50.00%	XP_647367.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments