Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AFM28276.1
MHC class II antigen [Ailuropoda melanoleuca]
...
Query length:
89 aa
DOMAINS: and other(s) domains
...
H-2 class II histocompatibility antigen, E-S beta chain
...
H-2 class II histocompatibility antigen, E-S beta chain [Danio rerio]
250 aa protein
accession:XP_005167291.1
histocompatibility 2, class II antigen A, beta 1 precursor
...
histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]
265 aa protein
accession:NP_996988.2
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor
...
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]
261 aa protein
accession:NP_001230891.1
Query: MHC class II antigen
...
MHC class II antigen [Ailuropoda melanoleuca]
89 aa protein
accession:AFM28276.1
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor
...
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]
261 aa protein
accession:NP_002114.3
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 2 precursor
...
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 2 precursor [Homo sapiens]
269 aa protein
accession:NP_001230890.1
DOMAINS: and other(s) domains
...
H-2 class II histocompatibility antigen, E-S beta chain [Danio rerio]
250 aa protein
accession:XP_005167291.1
histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]
265 aa protein
accession:NP_996988.2
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]
261 aa protein
accession:NP_001230891.1
MHC class II antigen [Ailuropoda melanoleuca]
89 aa protein
accession:AFM28276.1
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]
261 aa protein
accession:NP_002114.3
HLA class II histocompatibility antigen, DQ beta 1 chain isoform 2 precursor [Homo sapiens]
269 aa protein
accession:NP_001230890.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
Select:AllNone
Selected:0
Alignments
Download
GenPept
Graphics
Distance tree of results
Multiple alignment
Show/hide columns of the table presenting best hits
Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 146 | 146 | 100% | 3e-44 | 77.53% | NP_001230891.1 | |
| 2 | 135 | 135 | 98% | 4e-40 | 70.45% | NP_996988.2 | |
| 3 | 47.8 | 47.8 | 66% | 1e-06 | 33.90% | XP_005167291.1 | |
| 4 | 144 | 144 | 100% | 3e-43 | 76.40% | NP_002114.3 | |
| 5 | 144 | 144 | 100% | 3e-43 | 76.40% | NP_001230890.1 |