Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AFP43803.1 recombination activation protein 1 [Milvago chimachima] ... Query length: 356 aa

ATP-dependent helicase ...

ATP-dependent helicase [Schizosaccharomyces pombe]

963 aa protein

accession:NP_587701.1

Alignment Sequence Identical proteins

V(D)J recombination-activating protein 1 isoform X1 ...

V(D)J recombination-activating protein 1 isoform X1 [Danio rerio]

1057 aa protein

accession:XP_009296061.1

Alignment Sequence Identical proteins

V(D)J recombination-activating protein 1 isoform X1 ...

V(D)J recombination-activating protein 1 isoform X1 [Homo sapiens]

1043 aa protein

accession:XP_047283340.1

Alignment Sequence Identical proteins

Query: recombination activation protein 1 ...

recombination activation protein 1 [Milvago chimachima]

356 aa protein

accession:AFP43803.1

Sequence Identical proteins

hypothetical protein DDB_G0278183 ...

hypothetical protein DDB_G0278183 [Dictyostelium discoideum AX4]

601 aa protein

accession:XP_642185.1

Alignment Sequence Identical proteins

E3 ubiquitin-protein ligase RNF138 isoform X2 ...

E3 ubiquitin-protein ligase RNF138 isoform X2 [Rattus norvegicus]

209 aa protein

accession:XP_038953129.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047283340.1\|	V(D)J recombination-activating protein 1 isoform X1 [Homo sapiens]	434	434	100%	2e-143	58.20%	XP_047283340.1
2 Select seq ref\|XP_009296061.1\|	V(D)J recombination-activating protein 1 isoform X1 [Danio rerio]	201	201	97%	1e-56	30.16%	XP_009296061.1
3 Select seq ref\|NP_587701.1\|	ATP-dependent helicase [Schizosaccharomyces pombe]	51.6	51.6	23%	4e-06	31.40%	NP_587701.1
4 Select seq ref\|XP_642185.1\|	hypothetical protein DDB_G0278183 [Dictyostelium discoideum AX4]	45.1	45.1	23%	4e-04	33.33%	XP_642185.1
5 Select seq ref\|XP_038953129.1\|	E3 ubiquitin-protein ligase RNF138 isoform X2 [Rattus norvegicus]	43.1	43.1	25%	8e-04	28.42%	XP_038953129.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments