Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AFP46842.1 recombination activating protein 1 [Ischnocnema juipoca] ... Query length: 179 aa

uncharacterized protein Dmel_CG9014, isoform B ...

uncharacterized protein Dmel_CG9014, isoform B [Drosophila melanogaster]

328 aa protein

accession:NP_001285905.1

Alignment Sequence Identical proteins

ATP-dependent helicase ...

ATP-dependent helicase [Schizosaccharomyces pombe]

963 aa protein

accession:NP_587701.1

Alignment Sequence Identical proteins

DNA repair protein RAD16 ...

DNA repair protein RAD16 [Saccharomyces cerevisiae S288C]

790 aa protein

accession:NP_009672.1

Alignment Sequence Identical proteins

Query: recombination activating protein 1 ...

recombination activating protein 1 [Ischnocnema juipoca]

179 aa protein

accession:AFP46842.1

Sequence Identical proteins

V(D)J recombination-activating protein 1 isoform X1 ...

V(D)J recombination-activating protein 1 isoform X1 [Homo sapiens]

1043 aa protein

accession:XP_047283340.1

Alignment Sequence Identical proteins

V(D)J recombination-activating protein 1 isoform X1 ...

V(D)J recombination-activating protein 1 isoform X1 [Danio rerio]

1057 aa protein

accession:XP_009296061.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_047283340.1\|	V(D)J recombination-activating protein 1 isoform X1 [Homo sapiens]	180	180	100%	8e-52	46.52%	XP_047283340.1
2 Select seq ref\|XP_009296061.1\|	V(D)J recombination-activating protein 1 isoform X1 [Danio rerio]	117	117	83%	9e-30	37.33%	XP_009296061.1
3 Select seq ref\|NP_001285905.1\|	uncharacterized protein Dmel_CG9014, isoform B [Drosophila melanogaster]	51.2	51.2	49%	4e-07	31.52%	NP_001285905.1
4 Select seq ref\|NP_587701.1\|	ATP-dependent helicase [Schizosaccharomyces pombe]	49.3	49.3	31%	3e-06	31.67%	NP_587701.1
5 Select seq ref\|NP_009672.1\|	DNA repair protein RAD16 [Saccharomyces cerevisiae S288C]	47.4	47.4	60%	1e-05	31.62%	NP_009672.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments