Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AFQ33479.1 rhodopsin [Raiamas christyi] ... Query length: 273 aa

melanopsin-A ...

melanopsin-A [Danio rerio]

593 aa protein

accession:NP_001122233.1

Alignment Sequence Identical proteins

Query: rhodopsin ...

rhodopsin [Raiamas christyi]

273 aa protein

accession:AFQ33479.1

Sequence Identical proteins

rhodopsin isoform X1 ...

rhodopsin isoform X1 [Mus musculus]

344 aa protein

accession:XP_006505923.1

Alignment Sequence Identical proteins

rhodopsin isoform X2 ...

rhodopsin isoform X2 [Mus musculus]

338 aa protein

accession:XP_006505924.1

Alignment Sequence Identical proteins

rhodopsin ...

rhodopsin [Homo sapiens]

348 aa protein

accession:NP_000530.1

Alignment Sequence Identical proteins

extra-ocular rhodopsin ...

extra-ocular rhodopsin [Danio rerio]

354 aa protein

accession:NP_571287.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_006505923.1\|	rhodopsin isoform X1 [Mus musculus]	488	488	98%	2e-174	85.93%	XP_006505923.1
2 Select seq ref\|NP_000530.1\|	rhodopsin [Homo sapiens]	468	468	98%	2e-166	85.56%	NP_000530.1
3 Select seq ref\|NP_571287.1\|	extra-ocular rhodopsin [Danio rerio]	465	465	98%	3e-165	80.37%	NP_571287.1
4 Select seq NP_001122233.1	melanopsin-A [Danio rerio]	147	147	99%	2e-39	30.63%	NP_001122233.1
5 Select seq ref\|XP_006505924.1\|	rhodopsin isoform X2 [Mus musculus]	486	486	98%	6e-174	85.93%	XP_006505924.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments