Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AFV07081.1 RPB2 [Cortinarius erythrocephalus] ... Query length: 202 aa

Query: RPB2 ...

RPB2 [Cortinarius erythrocephalus]

202 aa protein

accession:AFV07081.1

Sequence Identical proteins

DNA-directed RNA polymerase II complex subunit Rpb2 ...

DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]

1210 aa protein

accession:NP_593101.2

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II core subunit RPB2 ...

DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]

1224 aa protein

accession:NP_014794.3

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]

1194 aa protein

accession:NP_498047.2

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 isoform 2 ...

DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Homo sapiens]

1099 aa protein

accession:NP_001290197.1

Alignment Sequence Identical proteins

DNA-directed RNA polymerase II subunit RPB2 ...

DNA-directed RNA polymerase II subunit RPB2 [Glycine max]

1192 aa protein

accession:XP_003533774.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_593101.2\|	DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]	246	246	99%	3e-74	57.21%	NP_593101.2
2 Select seq ref\|NP_014794.3\|	DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]	220	220	98%	4e-65	52.11%	NP_014794.3
3 Select seq ref\|NP_498047.2\|	DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]	213	213	98%	1e-62	52.74%	NP_498047.2
4 Select seq ref\|XP_003533774.1\|	DNA-directed RNA polymerase II subunit RPB2 [Glycine max]	213	213	99%	1e-62	52.97%	XP_003533774.1
5 Select seq ref\|NP_001290197.1\|	DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Homo sapiens]	207	207	99%	1e-60	50.00%	NP_001290197.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments