Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AIE90877.1 triple helix repeat-containing collagen [uncultured marine thaumarchaeote AD1000_07_E11] ... Query length: 282 aa

collagen alpha-4(VI) chain isoform X1 ...

collagen alpha-4(VI) chain isoform X1 [Mus musculus]

2309 aa protein

accession:XP_036011120.1

Alignment Sequence Identical proteins

collagen alpha-1(XXVII) chain B precursor ...

collagen alpha-1(XXVII) chain B precursor [Danio rerio]

1658 aa protein

accession:NP_001074044.1

Alignment Sequence Identical proteins

collagen alpha-1(XXIV) chain isoform X1 ...

collagen alpha-1(XXIV) chain isoform X1 [Rattus norvegicus]

1731 aa protein

accession:XP_063138993.1

Alignment Sequence Identical proteins

collagen-like exosporium glycoprotein BclA1 ...

collagen-like exosporium glycoprotein BclA1 [Clostridioides difficile]

681 aa protein

accession:WP_021368890.1

Alignment Sequence Identical proteins

Query: triple helix repeat-containing collagen ...

triple helix repeat-containing collagen [uncultured marine thaumarchaeote AD1000_07_E11]

282 aa protein

accession:AIE90877.1

Sequence Identical proteins

phage tail protein ...

phage tail protein [Escherichia coli]

645 aa protein

accession:WP_000117994.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|WP_021368890.1\|	collagen-like exosporium glycoprotein BclA1 [Clostridioides difficile]	132	681	91%	8e-34	43.87%	WP_021368890.1
2 Select seq ref\|NP_001074044.1\|	collagen alpha-1(XXVII) chain B precursor [Danio rerio]	128	1846	87%	3e-32	46.55%	NP_001074044.1
3 Select seq ref\|XP_063138993.1\|	collagen alpha-1(XXIV) chain isoform X1 [Rattus norvegicus]	110	1390	87%	3e-26	46.15%	XP_063138993.1
4 Select seq ref\|XP_036011120.1\|	collagen alpha-4(VI) chain isoform X1 [Mus musculus]	108	377	87%	2e-25	46.37%	XP_036011120.1
5 Select seq ref\|WP_000117994.1\|	phage tail protein [Escherichia coli]	107	612	90%	4e-25	38.91%	WP_000117994.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments