Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AIF01243.1
RNA polymerase, N/8 Kd subunit (rpoN) [uncultured marine thaumarchaeote KM3_144_G01]
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Query length:
78 aa
DOMAINS: and other(s) domains
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Query: RNA polymerase, N/8 Kd subunit (rpoN)
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RNA polymerase, N/8 Kd subunit (rpoN) [uncultured marine thaumarchaeote KM3_144_G01]
78 aa protein
accession:AIF01243.1
DNA-directed RNA polymerase subunit N
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DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius]
66 aa protein
accession:WP_011277015.1
DNA-directed RNA polymerases I, II, and III subunit RPABC5
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DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Caenorhabditis elegans]
67 aa protein
accession:NP_490923.1
RNA polymerase II, I and III subunit L
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RNA polymerase II, I and III subunit L [Drosophila melanogaster]
67 aa protein
accession:NP_651280.1
DNA-directed RNA polymerase ii
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DNA-directed RNA polymerase ii [Leishmania donovani]
84 aa protein
accession:XP_003861465.1
DNA-directed RNA polymerase subunit Rpb10
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DNA-directed RNA polymerase subunit Rpb10 [Schizosaccharomyces pombe]
71 aa protein
accession:NP_594797.1
DOMAINS: and other(s) domains
...
RNA polymerase, N/8 Kd subunit (rpoN) [uncultured marine thaumarchaeote KM3_144_G01]
78 aa protein
accession:AIF01243.1
DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius]
66 aa protein
accession:WP_011277015.1
DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Caenorhabditis elegans]
67 aa protein
accession:NP_490923.1
RNA polymerase II, I and III subunit L [Drosophila melanogaster]
67 aa protein
accession:NP_651280.1
DNA-directed RNA polymerase ii [Leishmania donovani]
84 aa protein
accession:XP_003861465.1
DNA-directed RNA polymerase subunit Rpb10 [Schizosaccharomyces pombe]
71 aa protein
accession:NP_594797.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 77.8 | 77.8 | 84% | 1e-19 | 48.48% | WP_011277015.1 | |
| 2 | 69.7 | 69.7 | 80% | 2e-16 | 41.27% | NP_490923.1 | |
| 3 | 68.9 | 68.9 | 79% | 5e-16 | 38.71% | XP_003861465.1 | |
| 4 | 67.8 | 67.8 | 79% | 9e-16 | 40.32% | NP_651280.1 | |
| 5 | 67.8 | 67.8 | 91% | 1e-15 | 36.62% | NP_594797.1 |