Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AIF09252.1
DNA-directed RNA polymerase subunit A' (rpoA1) [uncultured marine thaumarchaeote KM3_35_E05]
...
Query length:
1268 aa
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase III subunit RPC1
...
DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
1390 aa protein
accession:NP_008986.2
DNA-directed RNA polymerase III subunit RPC1
...
DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
1390 aa protein
accession:NP_001074716.1
DNA-directed RNA polymerase III subunit RPC1
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DNA-directed RNA polymerase III subunit RPC1 [Danio rerio]
1390 aa protein
accession:NP_001263425.1
DNA-directed RNA polymerase subunit A'
...
DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius]
880 aa protein
accession:WP_011277574.1
Query: DNA-directed RNA polymerase subunit A' (rpoA1)
...
DNA-directed RNA polymerase subunit A' (rpoA1) [uncultured marine thaumarchaeote KM3_35_E05]
1268 aa protein
accession:AIF09252.1
DNA-directed RNA polymerase subunit A'
...
DNA-directed RNA polymerase subunit A' [Methanothermobacter thermautotrophicus]
870 aa protein
accession:WP_010876677.1
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
1390 aa protein
accession:NP_008986.2
DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
1390 aa protein
accession:NP_001074716.1
DNA-directed RNA polymerase III subunit RPC1 [Danio rerio]
1390 aa protein
accession:NP_001263425.1
DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius]
880 aa protein
accession:WP_011277574.1
DNA-directed RNA polymerase subunit A' (rpoA1) [uncultured marine thaumarchaeote KM3_35_E05]
1268 aa protein
accession:AIF09252.1
DNA-directed RNA polymerase subunit A' [Methanothermobacter thermautotrophicus]
870 aa protein
accession:WP_010876677.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 926 | 926 | 68% | 0.0 | 52.24% | WP_011277574.1 | |
| 2 | 899 | 899 | 68% | 0.0 | 51.78% | WP_010876677.1 | |
| 3 | 797 | 797 | 99% | 0.0 | 36.06% | NP_008986.2 | |
| 4 | 796 | 796 | 99% | 0.0 | 35.92% | NP_001074716.1 | |
| 5 | 783 | 783 | 99% | 0.0 | 35.11% | NP_001263425.1 |