Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AIF15957.1
DNA-directed RNA polymerase subunit A' (rpoA1) [uncultured marine group II/III euryarchaeote KM3_72_A06]
...
Query length:
864 aa
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase III subunit RPC1, putative
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DNA-directed RNA polymerase III subunit RPC1, putative [Plasmodium falciparum 3D7]
2356 aa protein
accession:XP_001350009.1
RNA polymerase II largest subunit
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RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
1727 aa protein
accession:XP_641735.1
RNA polymerase II large subunit
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RNA polymerase II large subunit [Arabidopsis thaliana]
1839 aa protein
accession:NP_001329346.1
DNA-directed RNA polymerase subunit A'
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DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius]
880 aa protein
accession:WP_011277574.1
Query: DNA-directed RNA polymerase subunit A' (rpoA1)
...
DNA-directed RNA polymerase subunit A' (rpoA1) [uncultured marine group II/III euryarchaeote KM3_72_A06]
864 aa protein
accession:AIF15957.1
DNA-directed RNA polymerase subunit A'
...
DNA-directed RNA polymerase subunit A' [Methanothermobacter thermautotrophicus]
870 aa protein
accession:WP_010876677.1
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase III subunit RPC1, putative [Plasmodium falciparum 3D7]
2356 aa protein
accession:XP_001350009.1
RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
1727 aa protein
accession:XP_641735.1
RNA polymerase II large subunit [Arabidopsis thaliana]
1839 aa protein
accession:NP_001329346.1
DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius]
880 aa protein
accession:WP_011277574.1
DNA-directed RNA polymerase subunit A' (rpoA1) [uncultured marine group II/III euryarchaeote KM3_72_A06]
864 aa protein
accession:AIF15957.1
DNA-directed RNA polymerase subunit A' [Methanothermobacter thermautotrophicus]
870 aa protein
accession:WP_010876677.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 423 | 774 | 82% | 8e-134 | 46.46% | WP_010876677.1 | |
| 2 | 364 | 686 | 81% | 2e-111 | 43.04% | WP_011277574.1 | |
| 3 | 332 | 525 | 78% | 9e-96 | 39.34% | XP_641735.1 | |
| 4 | 325 | 461 | 78% | 5e-93 | 36.44% | XP_001350009.1 | |
| 5 | 310 | 498 | 79% | 4e-88 | 37.99% | NP_001329346.1 |