Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
AIL89719.2
RNA polymerase II second largest subunit [Coleophoma cylindrospora]
...
Query length:
112 aa
DOMAINS: and other(s) domains
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DNA-directed RNA polymerase II core subunit RPB2
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DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]
1224 aa protein
accession:NP_014794.3
RNA polymerase II subunit B, isoform B
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RNA polymerase II subunit B, isoform B [Drosophila melanogaster]
1176 aa protein
accession:NP_001287323.1
DNA-directed RNA polymerase II subunit RPB2
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DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]
1194 aa protein
accession:NP_498047.2
RNA polymerase II core subunit
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RNA polymerase II core subunit [Dictyostelium discoideum AX4]
1170 aa protein
accession:XP_636812.1
Query: RNA polymerase II second largest subunit
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RNA polymerase II second largest subunit [Coleophoma cylindrospora]
112 aa protein
accession:AIL89719.2
DNA-directed RNA polymerase II complex subunit Rpb2
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DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
1210 aa protein
accession:NP_593101.2
DOMAINS: and other(s) domains
...
DNA-directed RNA polymerase II core subunit RPB2 [Saccharomyces cerevisiae S288C]
1224 aa protein
accession:NP_014794.3
RNA polymerase II subunit B, isoform B [Drosophila melanogaster]
1176 aa protein
accession:NP_001287323.1
DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]
1194 aa protein
accession:NP_498047.2
RNA polymerase II core subunit [Dictyostelium discoideum AX4]
1170 aa protein
accession:XP_636812.1
RNA polymerase II second largest subunit [Coleophoma cylindrospora]
112 aa protein
accession:AIL89719.2
DNA-directed RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
1210 aa protein
accession:NP_593101.2
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Selected:0
Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 196 | 196 | 100% | 2e-58 | 80.36% | NP_593101.2 | |
| 2 | 183 | 183 | 100% | 5e-54 | 72.32% | NP_014794.3 | |
| 3 | 165 | 165 | 99% | 9e-48 | 68.47% | NP_001287323.1 | |
| 4 | 160 | 160 | 99% | 5e-46 | 67.57% | XP_636812.1 | |
| 5 | 153 | 153 | 99% | 2e-43 | 64.86% | NP_498047.2 |