Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: AYW11998.1 rhodopsin [Nemichthys scolopaceus] ... Query length: 299 aa

extra-ocular rhodopsin ...

extra-ocular rhodopsin [Danio rerio]

354 aa protein

accession:NP_571287.1

Alignment Sequence Identical proteins

Query: rhodopsin ...

rhodopsin [Nemichthys scolopaceus]

299 aa protein

accession:AYW11998.1

Sequence Identical proteins

rhodopsin ...

rhodopsin [Mus musculus]

348 aa protein

accession:NP_663358.1

Alignment Sequence Identical proteins

rhodopsin isoform X1 ...

rhodopsin isoform X1 [Mus musculus]

344 aa protein

accession:XP_006505923.1

Alignment Sequence Identical proteins

rhodopsin isoform X2 ...

rhodopsin isoform X2 [Mus musculus]

338 aa protein

accession:XP_006505924.1

Alignment Sequence Identical proteins

rhodopsin ...

rhodopsin [Homo sapiens]

348 aa protein

accession:NP_000530.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_663358.1\|	rhodopsin [Mus musculus]	525	525	100%	0.0	82.94%	NP_663358.1
2 Select seq ref\|NP_000530.1\|	rhodopsin [Homo sapiens]	506	506	100%	0.0	82.94%	NP_000530.1
3 Select seq ref\|NP_571287.1\|	extra-ocular rhodopsin [Danio rerio]	500	500	100%	9e-179	77.59%	NP_571287.1
4 Select seq ref\|XP_006505923.1\|	rhodopsin isoform X1 [Mus musculus]	508	508	97%	0.0	82.19%	XP_006505923.1
5 Select seq ref\|XP_006505924.1\|	rhodopsin isoform X2 [Mus musculus]	506	506	96%	0.0	83.04%	XP_006505924.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments