Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: BFM33995.1 polyprotein [Piper yellow mottle virus] ... Query length: 193 aa

retrotransposable element/transposon Tf2-type ...

retrotransposable element/transposon Tf2-type [Schizosaccharomyces pombe]

1333 aa protein

accession:NP_001018800.2

Alignment Sequence Identical proteins

hypothetical protein DDB_G0294236 ...

hypothetical protein DDB_G0294236 [Dictyostelium discoideum AX4]

1386 aa protein

accession:XP_628775.1

Alignment Sequence Identical proteins

gag-pol fusion protein ...

gag-pol fusion protein [Saccharomyces cerevisiae S288C]

1498 aa protein

accession:NP_012184.1

Alignment Sequence Identical proteins

Query: polyprotein ...

polyprotein [Piper yellow mottle virus]

193 aa protein

accession:BFM33995.1

Sequence Identical proteins

heparan-sulfate 6-O-sulfotransferase 1-A isoform X1 ...

heparan-sulfate 6-O-sulfotransferase 1-A isoform X1 [Danio rerio]

1354 aa protein

accession:XP_068080202.1

Alignment Sequence Identical proteins

uncharacterized protein LOC121172836 ...

uncharacterized protein LOC121172836 [Glycine max]

660 aa protein

accession:XP_040861404.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|NP_012184.1\|	gag-pol fusion protein [Saccharomyces cerevisiae S288C]	111	111	99%	4e-27	36.46%	NP_012184.1
2 Select seq ref\|XP_068080202.1\|	heparan-sulfate 6-O-sulfotransferase 1-A isoform X1 [Danio rerio]	101	101	98%	8e-24	35.23%	XP_068080202.1
3 Select seq ref\|XP_040861404.1\|	uncharacterized protein LOC121172836 [Glycine max]	99.4	99.4	98%	4e-23	32.29%	XP_040861404.1
4 Select seq ref\|XP_628775.1\|	hypothetical protein DDB_G0294236 [Dictyostelium discoideum AX4]	81.6	81.6	98%	6e-17	30.81%	XP_628775.1
5 Select seq ref\|NP_001018800.2\|	retrotransposable element/transposon Tf2-type [Schizosaccharomyces pombe]	80.9	80.9	98%	1e-16	27.23%	NP_001018800.2

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments