Smart BLAST

Summary [?]

A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".

Query: C0HLH4.1 RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen [Acratocnus sp. SLP-2019] ... Query length: 925 aa

collagen alpha-1(XXVII) chain isoform X3 ...

collagen alpha-1(XXVII) chain isoform X3 [Mus musculus]

1828 aa protein

accession:XP_036020100.1

Alignment Sequence Identical proteins

collagen alpha-6(IV) chain precursor ...

collagen alpha-6(IV) chain precursor [Rattus norvegicus]

1690 aa protein

accession:NP_001414189.1

Alignment Sequence Identical proteins

collagen alpha-6(IV) chain isoform X4 ...

collagen alpha-6(IV) chain isoform X4 [Homo sapiens]

1667 aa protein

accession:XP_047297769.1

Alignment Sequence Identical proteins

Query: RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen ...

RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen [Acratocnus sp. SLP-2019]

925 aa protein

accession:C0HLH4.1

Sequence Identical proteins

collagen alpha-2(I) chain isoform X1 ...

collagen alpha-2(I) chain isoform X1 [Danio rerio]

1352 aa protein

accession:XP_068071141.1

Alignment Sequence Identical proteins

collagen, type II, alpha 1a precursor ...

collagen, type II, alpha 1a precursor [Danio rerio]

1491 aa protein

accession:NP_571367.1

Alignment Sequence Identical proteins

About the database

See full multiple alignment Legend

Query sequence

nr matches

Landmark matches

Not aligned to query

Gap

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1 Select seq ref\|XP_068071141.1\|	collagen alpha-2(I) chain isoform X1 [Danio rerio]	538	772	94%	5e-172	61.09%	XP_068071141.1
2 Select seq ref\|NP_001414189.1\|	collagen alpha-6(IV) chain precursor [Rattus norvegicus]	251	1514	96%	5e-68	39.33%	NP_001414189.1
3 Select seq ref\|XP_036020100.1\|	collagen alpha-1(XXVII) chain isoform X3 [Mus musculus]	226	536	97%	5e-60	40.14%	XP_036020100.1
4 Select seq ref\|XP_047297769.1\|	collagen alpha-6(IV) chain isoform X4 [Homo sapiens]	220	1359	96%	5e-58	39.01%	XP_047297769.1
5 Select seq ref\|NP_571367.1\|	collagen, type II, alpha 1a precursor [Danio rerio]	396	563	92%	3e-118	52.44%	NP_571367.1

Summary [?]

Descriptions

Best hits

Additional BLAST Hits

Alignments