Summary [?]
A concise summary of the five best matches from well-studied reference species, showing phylogenetic relationships based on multiple sequence alignment and conserved protein domains. Additionally, more matches from the the non-redundant BLAST databases are included as "Additional BLAST Hits".
Query:
CAB60274.1
capsid protein [San Miguel sea lion virus 4]
...
Query length:
181 aa
DOMAINS: and other(s) domains
...
capsid protein
...
capsid protein [San Miguel sea lion virus 13]
241 aa protein
accession:CAB60276.1
capsid protein
...
capsid protein [Vesicular exanthema of swine virus A48]
237 aa protein
accession:CAB60278.1
capsid protein precursor
...
capsid protein precursor [Hom-1 vesivirus]
711 aa protein
accession:YP_009361875.1
capsid
...
capsid [San Miguel sea lion virus]
241 aa protein
accession:ABI34891.1
Query: capsid protein
...
capsid protein [San Miguel sea lion virus 4]
181 aa protein
accession:CAB60274.1
RecName: Full=Capsid protein VP1; Short=CP; AltName: Full=Capsid protein; AltName: Full=Coat protein; Contains: RecName: Full=Capsid leader protein; Short=LC; Contains: RecName: Full=Mature capsid protein
...
RecName: Full=Capsid protein VP1; Short=CP; AltName: Full=Capsid protein; AltName: Full=Coat protein; Contains: RecName: Full=Capsid leader protein; Short=LC; Contains: RecName: Full=Mature capsid protein [San Miguel sea lion virus 4]
703 aa protein
accession:P36285.1
DOMAINS: and other(s) domains
...
capsid protein [San Miguel sea lion virus 13]
241 aa protein
accession:CAB60276.1
capsid protein [Vesicular exanthema of swine virus A48]
237 aa protein
accession:CAB60278.1
capsid protein precursor [Hom-1 vesivirus]
711 aa protein
accession:YP_009361875.1
capsid [San Miguel sea lion virus]
241 aa protein
accession:ABI34891.1
capsid protein [San Miguel sea lion virus 4]
181 aa protein
accession:CAB60274.1
RecName: Full=Capsid protein VP1; Short=CP; AltName: Full=Capsid protein; AltName: Full=Coat protein; Contains: RecName: Full=Capsid leader protein; Short=LC; Contains: RecName: Full=Mature capsid protein [San Miguel sea lion virus 4]
703 aa protein
accession:P36285.1
See full multiple alignment
Legend
Query sequence
nr matches
Landmark matches
Not aligned to query
Gap
Descriptions
Best hits
Show all columns of the table presenting best hits producing significant alignments
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Alignments
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GenPept
Graphics
Distance tree of results
Multiple alignment
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Available columns
| Select for downloading or viewing reports | Description | Max score | Total score | Query cover | E value | Ident | Accession |
|---|---|---|---|---|---|---|---|
| 1 | 330 | 330 | 100% | 3e-112 | 93.37% | ABI34891.1 | |
| 2 | 333 | 333 | 100% | 3e-107 | 93.37% | P36285.1 | |
| 3 | 309 | 309 | 100% | 5e-104 | 86.74% | CAB60278.1 | |
| 4 | 307 | 307 | 100% | 3e-103 | 82.87% | CAB60276.1 | |
| 5 | 322 | 322 | 100% | 4e-103 | 85.08% | YP_009361875.1 |